dbCAN Logo

Cluster: HRGMv2_3983_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_9 HRGMv2_3983_9_168 184695 185804 - GH33
pfam HRGMv2_3983_9 HRGMv2_3983_9_169 185817 187274 - SusD_RagB | SusD-like_3
TC HRGMv2_3983_9 HRGMv2_3983_9_170 187292 190516 - 1.B.14.6.1
CAZyme HRGMv2_3983_9 HRGMv2_3983_9_171 190626 192050 - CE20
TC HRGMv2_3983_9 HRGMv2_3983_9_172 192069 193304 - 2.A.1.14.14
CAZyme HRGMv2_3983_9 HRGMv2_3983_9_173 193308 194948 - GH33
Gene ID: HRGMv2_3983_9_168
Type: CAZyme
Location: 184695 - 185804 (-)
Gene ID: HRGMv2_3983_9_169
Type: pfam
Location: 185817 - 187274 (-)
Gene ID: HRGMv2_3983_9_170
Type: TC
Location: 187292 - 190516 (-)
Gene ID: HRGMv2_3983_9_171
Type: CAZyme
Location: 190626 - 192050 (-)
Gene ID: HRGMv2_3983_9_172
Type: TC
Location: 192069 - 193304 (-)
Gene ID: HRGMv2_3983_9_173
Type: CAZyme
Location: 193308 - 194948 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_9_168 vegan > omnivore 1.63955 0.00229
HRGMv2_3983_9_169 vegan > omnivore 1.52634 0.00229
HRGMv2_3983_9_170 vegan > omnivore 1.16032 0.00229
HRGMv2_3983_9_171 vegan > omnivore 1.19930 0.00229
HRGMv2_3983_9_172 vegan > omnivore 1.07065 0.00229
HRGMv2_3983_9_173 vegan > omnivore 1.31895 0.00229

🧭 Explore Read Mapping of CGC

← Back to Cluster List