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Cluster: HRGMv2_3983_CGC45

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_8 HRGMv2_3983_8_24 37574 38785 - PL38
CAZyme HRGMv2_3983_8 HRGMv2_3983_8_25 38798 41269 - GH2
CAZyme HRGMv2_3983_8 HRGMv2_3983_8_26 41281 42546 - GH88
CAZyme HRGMv2_3983_8 HRGMv2_3983_8_27 42580 44472 - GH29
CAZyme HRGMv2_3983_8 HRGMv2_3983_8_28 44484 46856 - GH95
CAZyme HRGMv2_3983_8 HRGMv2_3983_8_29 46963 48396 - GH29
CAZyme HRGMv2_3983_8 HRGMv2_3983_8_30 48728 51064 + GH89
TF HRGMv2_3983_8 HRGMv2_3983_8_31 51402 55472 - HTH_AraC | HTH_AraC
TC HRGMv2_3983_8 HRGMv2_3983_8_32 55810 58929 + 1.B.14.6.1
TC HRGMv2_3983_8 HRGMv2_3983_8_33 58941 60482 + 8.A.46.1.3
pfam HRGMv2_3983_8 HRGMv2_3983_8_34 60514 61977 + TIG
NULL(UNKNOWN) HRGMv2_3983_8 HRGMv2_3983_8_35 61996 62763 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3983_8 HRGMv2_3983_8_36 62768 64870 + GH36 | GH36
Gene ID: HRGMv2_3983_8_24
Type: CAZyme
Location: 37574 - 38785 (-)
Gene ID: HRGMv2_3983_8_25
Type: CAZyme
Location: 38798 - 41269 (-)
Gene ID: HRGMv2_3983_8_26
Type: CAZyme
Location: 41281 - 42546 (-)
Gene ID: HRGMv2_3983_8_27
Type: CAZyme
Location: 42580 - 44472 (-)
Gene ID: HRGMv2_3983_8_28
Type: CAZyme
Location: 44484 - 46856 (-)
Gene ID: HRGMv2_3983_8_29
Type: CAZyme
Location: 46963 - 48396 (-)
Gene ID: HRGMv2_3983_8_30
Type: CAZyme
Location: 48728 - 51064 (+)
Gene ID: HRGMv2_3983_8_31
Type: TF
Location: 51402 - 55472 (-)
Gene ID: HRGMv2_3983_8_32
Type: TC
Location: 55810 - 58929 (+)
Gene ID: HRGMv2_3983_8_33
Type: TC
Location: 58941 - 60482 (+)
Gene ID: HRGMv2_3983_8_34
Type: pfam
Location: 60514 - 61977 (+)
Gene ID: HRGMv2_3983_8_35
Type:
Location: 61996 - 62763 (+)
Gene ID: HRGMv2_3983_8_36
Type: CAZyme
Location: 62768 - 64870 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_8_25 vegan > omnivore 2.67284 0.00229
HRGMv2_3983_8_25 vegetarian > omnivore 2.04243 0.03246

🧭 Explore Read Mapping of CGC

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