Cluster: HRGMv2_3983_CGC44
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 8
- Substrate:
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_01917
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_113 | 185020 | 187092 | - | GH127 |
| sulfatase | HRGMv2_3983_7 | HRGMv2_3983_7_114 | 187096 | 188226 | - | S1_22 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_115 | 188354 | 189817 | - | GH125 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_116 | 189820 | 192111 | - | GH92 |
| sulfatase | HRGMv2_3983_7 | HRGMv2_3983_7_117 | 192139 | 194619 | - | S1_4 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_118 | 194659 | 195918 | - | GH76 |
| pfam | HRGMv2_3983_7 | HRGMv2_3983_7_119 | 196144 | 197607 | - | Laminin_G_3 | DUF4972 |
| pfam | HRGMv2_3983_7 | HRGMv2_3983_7_120 | 197627 | 198781 | - | Laminin_G_3 | DUF4972 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_121 | 198803 | 200122 | - | GH76 |
| pfam | HRGMv2_3983_7 | HRGMv2_3983_7_122 | 200146 | 202068 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_7 | HRGMv2_3983_7_123 | 202080 | 205511 | - | 1.B.14.6.1 |
| STP | HRGMv2_3983_7 | HRGMv2_3983_7_124 | 205672 | 206874 | - | FecR |
| STP | HRGMv2_3983_7 | HRGMv2_3983_7_125 | 206989 | 207561 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_126 | 207667 | 208656 | - | GH43_34 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_127 | 208822 | 209919 | + | GH43_26 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_128 | 210190 | 212007 | + | GH2 |
Gene ID: HRGMv2_3983_7_113
Type: CAZyme
Location: 185020 - 187092 (-)
Type: CAZyme
Location: 185020 - 187092 (-)
Gene ID: HRGMv2_3983_7_114
Type: sulfatase
Location: 187096 - 188226 (-)
Type: sulfatase
Location: 187096 - 188226 (-)
Gene ID: HRGMv2_3983_7_115
Type: CAZyme
Location: 188354 - 189817 (-)
Type: CAZyme
Location: 188354 - 189817 (-)
Gene ID: HRGMv2_3983_7_116
Type: CAZyme
Location: 189820 - 192111 (-)
Type: CAZyme
Location: 189820 - 192111 (-)
Gene ID: HRGMv2_3983_7_117
Type: sulfatase
Location: 192139 - 194619 (-)
Type: sulfatase
Location: 192139 - 194619 (-)
Gene ID: HRGMv2_3983_7_118
Type: CAZyme
Location: 194659 - 195918 (-)
Type: CAZyme
Location: 194659 - 195918 (-)
Gene ID: HRGMv2_3983_7_119
Type: pfam
Location: 196144 - 197607 (-)
Type: pfam
Location: 196144 - 197607 (-)
Gene ID: HRGMv2_3983_7_120
Type: pfam
Location: 197627 - 198781 (-)
Type: pfam
Location: 197627 - 198781 (-)
Gene ID: HRGMv2_3983_7_121
Type: CAZyme
Location: 198803 - 200122 (-)
Type: CAZyme
Location: 198803 - 200122 (-)
Gene ID: HRGMv2_3983_7_122
Type: pfam
Location: 200146 - 202068 (-)
Type: pfam
Location: 200146 - 202068 (-)
Gene ID: HRGMv2_3983_7_123
Type: TC
Location: 202080 - 205511 (-)
Type: TC
Location: 202080 - 205511 (-)
Gene ID: HRGMv2_3983_7_124
Type: STP
Location: 205672 - 206874 (-)
Type: STP
Location: 205672 - 206874 (-)
Gene ID: HRGMv2_3983_7_125
Type: STP
Location: 206989 - 207561 (-)
Type: STP
Location: 206989 - 207561 (-)
Gene ID: HRGMv2_3983_7_126
Type: CAZyme
Location: 207667 - 208656 (-)
Type: CAZyme
Location: 207667 - 208656 (-)
Gene ID: HRGMv2_3983_7_127
Type: CAZyme
Location: 208822 - 209919 (+)
Type: CAZyme
Location: 208822 - 209919 (+)
Gene ID: HRGMv2_3983_7_128
Type: CAZyme
Location: 210190 - 212007 (+)
Type: CAZyme
Location: 210190 - 212007 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_7_124 | vegan > omnivore | 1.06871 | 0.00229 |
| HRGMv2_3983_7_125 | vegan > omnivore | 1.98745 | 0.00229 |
| HRGMv2_3983_7_125 | vegetarian > omnivore | 1.37290 | 0.03246 |