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Cluster: HRGMv2_3983_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_7 HRGMv2_3983_7_42 80458 81531 + GH16_3
TC HRGMv2_3983_7 HRGMv2_3983_7_43 81622 84762 + 1.B.14.6.2
TC HRGMv2_3983_7 HRGMv2_3983_7_44 84780 86363 + 8.A.46.2.2
CAZyme HRGMv2_3983_7 HRGMv2_3983_7_45 86426 87760 + GH18
pfam HRGMv2_3983_7 HRGMv2_3983_7_46 87781 88902 + HGSNAT_cat
TC HRGMv2_3983_7 HRGMv2_3983_7_47 88915 90243 + 2.A.1.7.9
CAZyme HRGMv2_3983_7 HRGMv2_3983_7_48 90219 91403 + CE9
pfam HRGMv2_3983_7 HRGMv2_3983_7_49 91354 92196 + Glucosamine_iso
CAZyme HRGMv2_3983_7 HRGMv2_3983_7_50 92207 93760 + GH20
CAZyme HRGMv2_3983_7 HRGMv2_3983_7_51 93766 95397 + GH20
Gene ID: HRGMv2_3983_7_42
Type: CAZyme
Location: 80458 - 81531 (+)
Gene ID: HRGMv2_3983_7_43
Type: TC
Location: 81622 - 84762 (+)
Gene ID: HRGMv2_3983_7_44
Type: TC
Location: 84780 - 86363 (+)
Gene ID: HRGMv2_3983_7_45
Type: CAZyme
Location: 86426 - 87760 (+)
Gene ID: HRGMv2_3983_7_46
Type: pfam
Location: 87781 - 88902 (+)
Gene ID: HRGMv2_3983_7_47
Type: TC
Location: 88915 - 90243 (+)
Gene ID: HRGMv2_3983_7_48
Type: CAZyme
Location: 90219 - 91403 (+)
Gene ID: HRGMv2_3983_7_49
Type: pfam
Location: 91354 - 92196 (+)
Gene ID: HRGMv2_3983_7_50
Type: CAZyme
Location: 92207 - 93760 (+)
Gene ID: HRGMv2_3983_7_51
Type: CAZyme
Location: 93766 - 95397 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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