Cluster: HRGMv2_3983_CGC41
🧬 Cluster Details
- Gene Count: 30
- CAZyme Count: 18
- Substrate: xylan
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_00238
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_7 | HRGMv2_3983_7_5 | 5837 | 9115 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_6 | 9267 | 10739 | - | GH30 |
| TF | HRGMv2_3983_7 | HRGMv2_3983_7_7 | 10879 | 14853 | - | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_3983_7 | HRGMv2_3983_7_8 | 15186 | 15650 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_9 | 15998 | 18052 | + | GH43_35 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_10 | 18482 | 21112 | - | GH2 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_11 | 21123 | 22022 | - | CE1 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_12 | 22081 | 23658 | - | CBM91 | GH43_10 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_13 | 23775 | 26570 | - | CBM35 | GH98 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_14 | 26621 | 28852 | - | GH10 |
| pfam | HRGMv2_3983_7 | HRGMv2_3983_7_15 | 28889 | 29923 | - | BT_3987-like_N | DUF5627 |
| pfam | HRGMv2_3983_7 | HRGMv2_3983_7_16 | 29955 | 31724 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_7 | HRGMv2_3983_7_17 | 31749 | 34592 | - | 1.B.14.6.1 |
| pfam | HRGMv2_3983_7 | HRGMv2_3983_7_18 | 34625 | 36511 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_7 | HRGMv2_3983_7_19 | 36513 | 39671 | - | 1.B.14.6.1 |
| TF | HRGMv2_3983_7 | HRGMv2_3983_7_20 | 40087 | 44067 | - | HTH_AraC |
| NULL(UNKNOWN) | HRGMv2_3983_7 | HRGMv2_3983_7_21 | 44440 | 44889 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_22 | 44909 | 47449 | + | GH115 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_23 | 47529 | 51593 | + | CBM91 | GH43_10 | GH51_2 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_24 | 51642 | 53036 | + | CBM6 | GH43_29 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_25 | 53042 | 54994 | + | GH97 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_26 | 55022 | 57454 | + | GH95 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_27 | 57517 | 58896 | - | CBM6 | GH43_29 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_28 | 58991 | 60355 | - | CBM6 | GH43_29 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_29 | 60359 | 62887 | - | GH31_5 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_30 | 62966 | 65410 | - | GH31_4 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_31 | 65437 | 67164 | - | CBM91 | GH43_12 |
| CAZyme | HRGMv2_3983_7 | HRGMv2_3983_7_32 | 67606 | 70215 | - | GH3 |
| sulfatase | HRGMv2_3983_7 | HRGMv2_3983_7_33 | 70359 | 71375 | - | S1_16 |
| TC | HRGMv2_3983_7 | HRGMv2_3983_7_34 | 71400 | 72665 | - | 2.A.1.7.1 |
Gene ID: HRGMv2_3983_7_5
Type: TC
Location: 5837 - 9115 (-)
Type: TC
Location: 5837 - 9115 (-)
Gene ID: HRGMv2_3983_7_6
Type: CAZyme
Location: 9267 - 10739 (-)
Type: CAZyme
Location: 9267 - 10739 (-)
Gene ID: HRGMv2_3983_7_7
Type: TF
Location: 10879 - 14853 (-)
Type: TF
Location: 10879 - 14853 (-)
Gene ID: HRGMv2_3983_7_8
Type:
Location: 15186 - 15650 (+)
Type:
Location: 15186 - 15650 (+)
Gene ID: HRGMv2_3983_7_9
Type: CAZyme
Location: 15998 - 18052 (+)
Type: CAZyme
Location: 15998 - 18052 (+)
Gene ID: HRGMv2_3983_7_10
Type: CAZyme
Location: 18482 - 21112 (-)
Type: CAZyme
Location: 18482 - 21112 (-)
Gene ID: HRGMv2_3983_7_11
Type: CAZyme
Location: 21123 - 22022 (-)
Type: CAZyme
Location: 21123 - 22022 (-)
Gene ID: HRGMv2_3983_7_12
Type: CAZyme
Location: 22081 - 23658 (-)
Type: CAZyme
Location: 22081 - 23658 (-)
Gene ID: HRGMv2_3983_7_13
Type: CAZyme
Location: 23775 - 26570 (-)
Type: CAZyme
Location: 23775 - 26570 (-)
Gene ID: HRGMv2_3983_7_14
Type: CAZyme
Location: 26621 - 28852 (-)
Type: CAZyme
Location: 26621 - 28852 (-)
Gene ID: HRGMv2_3983_7_15
Type: pfam
Location: 28889 - 29923 (-)
Type: pfam
Location: 28889 - 29923 (-)
Gene ID: HRGMv2_3983_7_16
Type: pfam
Location: 29955 - 31724 (-)
Type: pfam
Location: 29955 - 31724 (-)
Gene ID: HRGMv2_3983_7_17
Type: TC
Location: 31749 - 34592 (-)
Type: TC
Location: 31749 - 34592 (-)
Gene ID: HRGMv2_3983_7_18
Type: pfam
Location: 34625 - 36511 (-)
Type: pfam
Location: 34625 - 36511 (-)
Gene ID: HRGMv2_3983_7_19
Type: TC
Location: 36513 - 39671 (-)
Type: TC
Location: 36513 - 39671 (-)
Gene ID: HRGMv2_3983_7_20
Type: TF
Location: 40087 - 44067 (-)
Type: TF
Location: 40087 - 44067 (-)
Gene ID: HRGMv2_3983_7_21
Type:
Location: 44440 - 44889 (+)
Type:
Location: 44440 - 44889 (+)
Gene ID: HRGMv2_3983_7_22
Type: CAZyme
Location: 44909 - 47449 (+)
Type: CAZyme
Location: 44909 - 47449 (+)
Gene ID: HRGMv2_3983_7_23
Type: CAZyme
Location: 47529 - 51593 (+)
Type: CAZyme
Location: 47529 - 51593 (+)
Gene ID: HRGMv2_3983_7_24
Type: CAZyme
Location: 51642 - 53036 (+)
Type: CAZyme
Location: 51642 - 53036 (+)
Gene ID: HRGMv2_3983_7_25
Type: CAZyme
Location: 53042 - 54994 (+)
Type: CAZyme
Location: 53042 - 54994 (+)
Gene ID: HRGMv2_3983_7_26
Type: CAZyme
Location: 55022 - 57454 (+)
Type: CAZyme
Location: 55022 - 57454 (+)
Gene ID: HRGMv2_3983_7_27
Type: CAZyme
Location: 57517 - 58896 (-)
Type: CAZyme
Location: 57517 - 58896 (-)
Gene ID: HRGMv2_3983_7_28
Type: CAZyme
Location: 58991 - 60355 (-)
Type: CAZyme
Location: 58991 - 60355 (-)
Gene ID: HRGMv2_3983_7_29
Type: CAZyme
Location: 60359 - 62887 (-)
Type: CAZyme
Location: 60359 - 62887 (-)
Gene ID: HRGMv2_3983_7_30
Type: CAZyme
Location: 62966 - 65410 (-)
Type: CAZyme
Location: 62966 - 65410 (-)
Gene ID: HRGMv2_3983_7_31
Type: CAZyme
Location: 65437 - 67164 (-)
Type: CAZyme
Location: 65437 - 67164 (-)
Gene ID: HRGMv2_3983_7_32
Type: CAZyme
Location: 67606 - 70215 (-)
Type: CAZyme
Location: 67606 - 70215 (-)
Gene ID: HRGMv2_3983_7_33
Type: sulfatase
Location: 70359 - 71375 (-)
Type: sulfatase
Location: 70359 - 71375 (-)
Gene ID: HRGMv2_3983_7_34
Type: TC
Location: 71400 - 72665 (-)
Type: TC
Location: 71400 - 72665 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_7_5 | vegan > omnivore | 3.59962 | 0.00229 |
| HRGMv2_3983_7_5 | vegetarian > omnivore | 1.71007 | 0.01498 |
| HRGMv2_3983_7_27 | vegetarian > omnivore | 1.72770 | 0.01352 |