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Cluster: HRGMv2_3983_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_6 HRGMv2_3983_6_120 185671 187410 - CE12 | CE8
CAZyme HRGMv2_3983_6 HRGMv2_3983_6_121 187944 188888 - CE8
CAZyme HRGMv2_3983_6 HRGMv2_3983_6_122 188925 190124 - GH105
TC HRGMv2_3983_6 HRGMv2_3983_6_123 190427 191830 + 4.A.5.1.4
pfam HRGMv2_3983_6 HRGMv2_3983_6_124 191866 192786 + KduI
NULL(UNKNOWN) HRGMv2_3983_6 HRGMv2_3983_6_125 192805 192963 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3983_6 HRGMv2_3983_6_126 193105 194553 + 2.A.1.14.25
pfam HRGMv2_3983_6 HRGMv2_3983_6_127 194953 198624 - DEAD | ResIII | AAA_11 | AAA_11 | AAA_12 | AAA_19 | AAA_30
TC HRGMv2_3983_6 HRGMv2_3983_6_128 198599 199435 - 2.A.64.1.2
Gene ID: HRGMv2_3983_6_120
Type: CAZyme
Location: 185671 - 187410 (-)
Gene ID: HRGMv2_3983_6_121
Type: CAZyme
Location: 187944 - 188888 (-)
Gene ID: HRGMv2_3983_6_122
Type: CAZyme
Location: 188925 - 190124 (-)
Gene ID: HRGMv2_3983_6_123
Type: TC
Location: 190427 - 191830 (+)
Gene ID: HRGMv2_3983_6_124
Type: pfam
Location: 191866 - 192786 (+)
Gene ID: HRGMv2_3983_6_125
Type:
Location: 192805 - 192963 (-)
Gene ID: HRGMv2_3983_6_126
Type: TC
Location: 193105 - 194553 (+)
Gene ID: HRGMv2_3983_6_127
Type: pfam
Location: 194953 - 198624 (-)
Gene ID: HRGMv2_3983_6_128
Type: TC
Location: 198599 - 199435 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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