Cluster: HRGMv2_3983_CGC37
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 7
- Substrate: pectin
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_00927
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_6 | HRGMv2_3983_6_66 | 93095 | 96289 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3983_6 | HRGMv2_3983_6_67 | 96317 | 98353 | + | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_6 | HRGMv2_3983_6_68 | 98420 | 100507 | + | 1.B.14.6.1 |
| NULL(UNKNOWN) | HRGMv2_3983_6 | HRGMv2_3983_6_69 | 100470 | 101252 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | HRGMv2_3983_6 | HRGMv2_3983_6_70 | 101274 | 102986 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_71 | 103094 | 105142 | + | PL11_1 |
| pfam | HRGMv2_3983_6 | HRGMv2_3983_6_72 | 105264 | 105953 | - | Lipase_GDSL_2 | Lipase_GDSL_lke |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_73 | 106042 | 107445 | - | GH28 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_74 | 107512 | 110466 | - | GH42 | GH43_18 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_75 | 110682 | 113639 | + | GH2 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_76 | 113656 | 115179 | + | GH28 |
| pfam | HRGMv2_3983_6 | HRGMv2_3983_6_77 | 115130 | 115705 | + | DUF4450 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_78 | 115702 | 117105 | + | GH28 |
| CAZyme | HRGMv2_3983_6 | HRGMv2_3983_6_79 | 117102 | 119870 | + | GH106 |
Gene ID: HRGMv2_3983_6_66
Type: TC
Location: 93095 - 96289 (+)
Type: TC
Location: 93095 - 96289 (+)
Gene ID: HRGMv2_3983_6_67
Type: pfam
Location: 96317 - 98353 (+)
Type: pfam
Location: 96317 - 98353 (+)
Gene ID: HRGMv2_3983_6_68
Type: TC
Location: 98420 - 100507 (+)
Type: TC
Location: 98420 - 100507 (+)
Gene ID: HRGMv2_3983_6_69
Type:
Location: 100470 - 101252 (+)
Type:
Location: 100470 - 101252 (+)
Gene ID: HRGMv2_3983_6_70
Type: pfam
Location: 101274 - 102986 (+)
Type: pfam
Location: 101274 - 102986 (+)
Gene ID: HRGMv2_3983_6_71
Type: CAZyme
Location: 103094 - 105142 (+)
Type: CAZyme
Location: 103094 - 105142 (+)
Gene ID: HRGMv2_3983_6_72
Type: pfam
Location: 105264 - 105953 (-)
Type: pfam
Location: 105264 - 105953 (-)
Gene ID: HRGMv2_3983_6_73
Type: CAZyme
Location: 106042 - 107445 (-)
Type: CAZyme
Location: 106042 - 107445 (-)
Gene ID: HRGMv2_3983_6_74
Type: CAZyme
Location: 107512 - 110466 (-)
Type: CAZyme
Location: 107512 - 110466 (-)
Gene ID: HRGMv2_3983_6_75
Type: CAZyme
Location: 110682 - 113639 (+)
Type: CAZyme
Location: 110682 - 113639 (+)
Gene ID: HRGMv2_3983_6_76
Type: CAZyme
Location: 113656 - 115179 (+)
Type: CAZyme
Location: 113656 - 115179 (+)
Gene ID: HRGMv2_3983_6_77
Type: pfam
Location: 115130 - 115705 (+)
Type: pfam
Location: 115130 - 115705 (+)
Gene ID: HRGMv2_3983_6_78
Type: CAZyme
Location: 115702 - 117105 (+)
Type: CAZyme
Location: 115702 - 117105 (+)
Gene ID: HRGMv2_3983_6_79
Type: CAZyme
Location: 117102 - 119870 (+)
Type: CAZyme
Location: 117102 - 119870 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_6_72 | vegan > omnivore | 1.18208 | 0.00229 |
| HRGMv2_3983_6_72 | vegetarian > omnivore | 1.18889 | 0.01175 |