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Cluster: HRGMv2_3983_CGC35

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_6 HRGMv2_3983_6_12 11416 12981 - PL9_1
pfam HRGMv2_3983_6 HRGMv2_3983_6_13 12995 13603 - WG_beta_rep | WG_beta_rep | WG_beta_rep
CAZyme HRGMv2_3983_6 HRGMv2_3983_6_14 13657 15123 - GH28
CAZyme HRGMv2_3983_6 HRGMv2_3983_6_15 15346 17238 + PL11_1
TF HRGMv2_3983_6 HRGMv2_3983_6_16 17392 21705 + HTH_AraC
TC HRGMv2_3983_6 HRGMv2_3983_6_17 21912 25043 + 1.B.14.6.1
TC HRGMv2_3983_6 HRGMv2_3983_6_18 25062 26666 + 8.A.46.1.3
CAZyme HRGMv2_3983_6 HRGMv2_3983_6_19 26688 29660 + GH2
pfam HRGMv2_3983_6 HRGMv2_3983_6_20 30239 31117 - SASA
NULL(UNKNOWN) HRGMv2_3983_6 HRGMv2_3983_6_21 31141 31914 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3983_6 HRGMv2_3983_6_22 31947 33227 - CE12
Gene ID: HRGMv2_3983_6_12
Type: CAZyme
Location: 11416 - 12981 (-)
Gene ID: HRGMv2_3983_6_13
Type: pfam
Location: 12995 - 13603 (-)
Gene ID: HRGMv2_3983_6_14
Type: CAZyme
Location: 13657 - 15123 (-)
Gene ID: HRGMv2_3983_6_15
Type: CAZyme
Location: 15346 - 17238 (+)
Gene ID: HRGMv2_3983_6_16
Type: TF
Location: 17392 - 21705 (+)
Gene ID: HRGMv2_3983_6_17
Type: TC
Location: 21912 - 25043 (+)
Gene ID: HRGMv2_3983_6_18
Type: TC
Location: 25062 - 26666 (+)
Gene ID: HRGMv2_3983_6_19
Type: CAZyme
Location: 26688 - 29660 (+)
Gene ID: HRGMv2_3983_6_20
Type: pfam
Location: 30239 - 31117 (-)
Gene ID: HRGMv2_3983_6_21
Type:
Location: 31141 - 31914 (-)
Gene ID: HRGMv2_3983_6_22
Type: CAZyme
Location: 31947 - 33227 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_6_17 vegan > omnivore 1.05532 0.00229

🧭 Explore Read Mapping of CGC

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