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Cluster: HRGMv2_3983_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_5 HRGMv2_3983_5_191 257616 259937 + GH20
CAZyme HRGMv2_3983_5 HRGMv2_3983_5_192 259972 262611 + GH2
pfam HRGMv2_3983_5 HRGMv2_3983_5_193 262774 263085 + FeS_assembly_P
NULL(UNKNOWN) HRGMv2_3983_5 HRGMv2_3983_5_194 263181 263945 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme HRGMv2_3983_5 HRGMv2_3983_5_195 264230 266578 - GH13_10
pfam HRGMv2_3983_5 HRGMv2_3983_5_196 266682 268046 - SusF_N
pfam HRGMv2_3983_5 HRGMv2_3983_5_197 268070 269218 - SusE | SusF_SusE
TC HRGMv2_3983_5 HRGMv2_3983_5_198 269257 270855 - 8.A.46.1.1
TC HRGMv2_3983_5 HRGMv2_3983_5_199 270876 273899 - 1.B.14.6.1
CAZyme HRGMv2_3983_5 HRGMv2_3983_5_200 273994 276204 - GH97
CAZyme HRGMv2_3983_5 HRGMv2_3983_5_201 276402 278255 - GH13_46
Gene ID: HRGMv2_3983_5_191
Type: CAZyme
Location: 257616 - 259937 (+)
Gene ID: HRGMv2_3983_5_192
Type: CAZyme
Location: 259972 - 262611 (+)
Gene ID: HRGMv2_3983_5_193
Type: pfam
Location: 262774 - 263085 (+)
Gene ID: HRGMv2_3983_5_194
Type:
Location: 263181 - 263945 (+)
Gene ID: HRGMv2_3983_5_195
Type: CAZyme
Location: 264230 - 266578 (-)
Gene ID: HRGMv2_3983_5_196
Type: pfam
Location: 266682 - 268046 (-)
Gene ID: HRGMv2_3983_5_197
Type: pfam
Location: 268070 - 269218 (-)
Gene ID: HRGMv2_3983_5_198
Type: TC
Location: 269257 - 270855 (-)
Gene ID: HRGMv2_3983_5_199
Type: TC
Location: 270876 - 273899 (-)
Gene ID: HRGMv2_3983_5_200
Type: CAZyme
Location: 273994 - 276204 (-)
Gene ID: HRGMv2_3983_5_201
Type: CAZyme
Location: 276402 - 278255 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_5_199 vegan > omnivore 1.28460 0.00229

🧭 Explore Read Mapping of CGC

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