Cluster: HRGMv2_3983_CGC32
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate:
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_02229
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_5 | HRGMv2_3983_5_161 | 204251 | 207400 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3983_5 | HRGMv2_3983_5_162 | 207433 | 209340 | + | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_5 | HRGMv2_3983_5_163 | 209410 | 212403 | + | 1.B.14.6.2 |
| pfam | HRGMv2_3983_5 | HRGMv2_3983_5_164 | 212444 | 214111 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_3983_5 | HRGMv2_3983_5_165 | 214149 | 215045 | + | CBM32 |
| CAZyme | HRGMv2_3983_5 | HRGMv2_3983_5_166 | 215065 | 216528 | + | GH16_3 |
| CAZyme | HRGMv2_3983_5 | HRGMv2_3983_5_167 | 216623 | 217777 | + | GH43_24 |
| CAZyme | HRGMv2_3983_5 | HRGMv2_3983_5_168 | 217902 | 219158 | + | GH154 |
| CAZyme | HRGMv2_3983_5 | HRGMv2_3983_5_169 | 219188 | 220210 | + | GH43_24 |
| CAZyme | HRGMv2_3983_5 | HRGMv2_3983_5_170 | 220225 | 221520 | + | PL42 |
| CAZyme | HRGMv2_3983_5 | HRGMv2_3983_5_171 | 221525 | 222658 | + | GH105 |
| pfam | HRGMv2_3983_5 | HRGMv2_3983_5_172 | 222742 | 223758 | - | Acetyltransf_1 | Acetyltransf_9 |
| pfam | HRGMv2_3983_5 | HRGMv2_3983_5_173 | 223772 | 224689 | - | LPG_synthase_C |
| TC | HRGMv2_3983_5 | HRGMv2_3983_5_174 | 224746 | 225441 | - | 2.A.122.1.1 |
| TC | HRGMv2_3983_5 | HRGMv2_3983_5_175 | 225438 | 225881 | - | 1.E.14.1.13 |
Gene ID: HRGMv2_3983_5_161
Type: TC
Location: 204251 - 207400 (+)
Type: TC
Location: 204251 - 207400 (+)
Gene ID: HRGMv2_3983_5_162
Type: pfam
Location: 207433 - 209340 (+)
Type: pfam
Location: 207433 - 209340 (+)
Gene ID: HRGMv2_3983_5_163
Type: TC
Location: 209410 - 212403 (+)
Type: TC
Location: 209410 - 212403 (+)
Gene ID: HRGMv2_3983_5_164
Type: pfam
Location: 212444 - 214111 (+)
Type: pfam
Location: 212444 - 214111 (+)
Gene ID: HRGMv2_3983_5_165
Type: CAZyme
Location: 214149 - 215045 (+)
Type: CAZyme
Location: 214149 - 215045 (+)
Gene ID: HRGMv2_3983_5_166
Type: CAZyme
Location: 215065 - 216528 (+)
Type: CAZyme
Location: 215065 - 216528 (+)
Gene ID: HRGMv2_3983_5_167
Type: CAZyme
Location: 216623 - 217777 (+)
Type: CAZyme
Location: 216623 - 217777 (+)
Gene ID: HRGMv2_3983_5_168
Type: CAZyme
Location: 217902 - 219158 (+)
Type: CAZyme
Location: 217902 - 219158 (+)
Gene ID: HRGMv2_3983_5_169
Type: CAZyme
Location: 219188 - 220210 (+)
Type: CAZyme
Location: 219188 - 220210 (+)
Gene ID: HRGMv2_3983_5_170
Type: CAZyme
Location: 220225 - 221520 (+)
Type: CAZyme
Location: 220225 - 221520 (+)
Gene ID: HRGMv2_3983_5_171
Type: CAZyme
Location: 221525 - 222658 (+)
Type: CAZyme
Location: 221525 - 222658 (+)
Gene ID: HRGMv2_3983_5_172
Type: pfam
Location: 222742 - 223758 (-)
Type: pfam
Location: 222742 - 223758 (-)
Gene ID: HRGMv2_3983_5_173
Type: pfam
Location: 223772 - 224689 (-)
Type: pfam
Location: 223772 - 224689 (-)
Gene ID: HRGMv2_3983_5_174
Type: TC
Location: 224746 - 225441 (-)
Type: TC
Location: 224746 - 225441 (-)
Gene ID: HRGMv2_3983_5_175
Type: TC
Location: 225438 - 225881 (-)
Type: TC
Location: 225438 - 225881 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.