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Cluster: HRGMv2_3983_CGC31

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_5 HRGMv2_3983_5_59 83115 84509 + GH76
TC HRGMv2_3983_5 HRGMv2_3983_5_60 84576 87791 + 1.B.14.6.1
pfam HRGMv2_3983_5 HRGMv2_3983_5_61 87807 89735 + SusD_RagB | SusD-like_3
pfam HRGMv2_3983_5 HRGMv2_3983_5_62 89772 91337 + Laminin_G_3
CAZyme HRGMv2_3983_5 HRGMv2_3983_5_63 91413 93752 - GH3
TF HRGMv2_3983_5 HRGMv2_3983_5_64 94160 98233 + HTH_AraC
CAZyme HRGMv2_3983_5 HRGMv2_3983_5_65 98439 99554 + GH105
NULL(UNKNOWN) HRGMv2_3983_5 HRGMv2_3983_5_66 99598 100293 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3983_5 HRGMv2_3983_5_67 100314 103370 + 1.B.14.6.1
Gene ID: HRGMv2_3983_5_59
Type: CAZyme
Location: 83115 - 84509 (+)
Gene ID: HRGMv2_3983_5_60
Type: TC
Location: 84576 - 87791 (+)
Gene ID: HRGMv2_3983_5_61
Type: pfam
Location: 87807 - 89735 (+)
Gene ID: HRGMv2_3983_5_62
Type: pfam
Location: 89772 - 91337 (+)
Gene ID: HRGMv2_3983_5_63
Type: CAZyme
Location: 91413 - 93752 (-)
Gene ID: HRGMv2_3983_5_64
Type: TF
Location: 94160 - 98233 (+)
Gene ID: HRGMv2_3983_5_65
Type: CAZyme
Location: 98439 - 99554 (+)
Gene ID: HRGMv2_3983_5_66
Type:
Location: 99598 - 100293 (+)
Gene ID: HRGMv2_3983_5_67
Type: TC
Location: 100314 - 103370 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_5_59 vegan > omnivore 1.05585 0.00229

🧭 Explore Read Mapping of CGC

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