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Cluster: HRGMv2_3983_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_4 HRGMv2_3983_4_195 264979 267324 + GH92
pfam HRGMv2_3983_4 HRGMv2_3983_4_196 267338 268132 + BSP
CAZyme HRGMv2_3983_4 HRGMv2_3983_4_197 268095 270485 + GH92
CAZyme HRGMv2_3983_4 HRGMv2_3983_4_198 270501 272447 + GH97
TF HRGMv2_3983_4 HRGMv2_3983_4_199 272457 273254 - LytTR
TC HRGMv2_3983_4 HRGMv2_3983_4_200 273273 274340 - 9.B.33.1.1
TC HRGMv2_3983_4 HRGMv2_3983_4_201 274362 275312 - 2.A.6.2.20
TC HRGMv2_3983_4 HRGMv2_3983_4_202 275326 279675 - 2.A.6.1.2
Gene ID: HRGMv2_3983_4_195
Type: CAZyme
Location: 264979 - 267324 (+)
Gene ID: HRGMv2_3983_4_196
Type: pfam
Location: 267338 - 268132 (+)
Gene ID: HRGMv2_3983_4_197
Type: CAZyme
Location: 268095 - 270485 (+)
Gene ID: HRGMv2_3983_4_198
Type: CAZyme
Location: 270501 - 272447 (+)
Gene ID: HRGMv2_3983_4_199
Type: TF
Location: 272457 - 273254 (-)
Gene ID: HRGMv2_3983_4_200
Type: TC
Location: 273273 - 274340 (-)
Gene ID: HRGMv2_3983_4_201
Type: TC
Location: 274362 - 275312 (-)
Gene ID: HRGMv2_3983_4_202
Type: TC
Location: 275326 - 279675 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_4_200 vegan > omnivore 1.39862 0.00229

🧭 Explore Read Mapping of CGC

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