Cluster: HRGMv2_3983_CGC28
🧬 Cluster Details
- Gene Count: 24
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3983
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_4 | HRGMv2_3983_4_117 | 158561 | 159586 | + | 2.A.7.6.1 |
| pfam | HRGMv2_3983_4 | HRGMv2_3983_4_118 | 159628 | 160872 | + | URO-D |
| CAZyme | HRGMv2_3983_4 | HRGMv2_3983_4_119 | 160957 | 163596 | + | GH20 | GH29 |
| NULL(UNKNOWN) | HRGMv2_3983_4 | HRGMv2_3983_4_120 | 163616 | 163723 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3983_4 | HRGMv2_3983_4_121 | 163746 | 165641 | + | GH120 |
| pfam | HRGMv2_3983_4 | HRGMv2_3983_4_122 | 165744 | 166973 | + | Glyco_hydro_18 |
| STP | HRGMv2_3983_4 | HRGMv2_3983_4_123 | 167090 | 168052 | - | TPR_1 |
| TC | HRGMv2_3983_4 | HRGMv2_3983_4_124 | 168091 | 169998 | - | 2.A.16.2.2 |
| pfam | HRGMv2_3983_4 | HRGMv2_3983_4_125 | 169991 | 171709 | - | DHH | DHHA1 | RecJ_OB |
| CAZyme | HRGMv2_3983_4 | HRGMv2_3983_4_126 | 171958 | 173772 | - | GH123 |
| CAZyme | HRGMv2_3983_4 | HRGMv2_3983_4_127 | 173795 | 175981 | - | GH3 |
| TF | HRGMv2_3983_4 | HRGMv2_3983_4_128 | 176227 | 176748 | + | GerE |
| STP | HRGMv2_3983_4 | HRGMv2_3983_4_129 | 176863 | 178026 | + | FecR |
| TC | HRGMv2_3983_4 | HRGMv2_3983_4_130 | 178041 | 181544 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3983_4 | HRGMv2_3983_4_131 | 181559 | 183496 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_3983_4 | HRGMv2_3983_4_132 | 183588 | 187664 | - | GH3 |
| CAZyme | HRGMv2_3983_4 | HRGMv2_3983_4_133 | 187743 | 189260 | - | GH16_3 |
| pfam | HRGMv2_3983_4 | HRGMv2_3983_4_134 | 189311 | 190969 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_4 | HRGMv2_3983_4_135 | 190982 | 193717 | - | 1.B.14.6.2 |
| pfam | HRGMv2_3983_4 | HRGMv2_3983_4_136 | 193755 | 195578 | - | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_4 | HRGMv2_3983_4_137 | 195591 | 198752 | - | 1.B.14.6.1 |
| STP | HRGMv2_3983_4 | HRGMv2_3983_4_138 | 198933 | 199463 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | HRGMv2_3983_4 | HRGMv2_3983_4_139 | 199665 | 200600 | + | FecR |
| TC | HRGMv2_3983_4 | HRGMv2_3983_4_140 | 200782 | 204147 | + | 1.B.14.6.1 |
Gene ID: HRGMv2_3983_4_117
Type: TC
Location: 158561 - 159586 (+)
Type: TC
Location: 158561 - 159586 (+)
Gene ID: HRGMv2_3983_4_118
Type: pfam
Location: 159628 - 160872 (+)
Type: pfam
Location: 159628 - 160872 (+)
Gene ID: HRGMv2_3983_4_119
Type: CAZyme
Location: 160957 - 163596 (+)
Type: CAZyme
Location: 160957 - 163596 (+)
Gene ID: HRGMv2_3983_4_120
Type:
Location: 163616 - 163723 (+)
Type:
Location: 163616 - 163723 (+)
Gene ID: HRGMv2_3983_4_121
Type: CAZyme
Location: 163746 - 165641 (+)
Type: CAZyme
Location: 163746 - 165641 (+)
Gene ID: HRGMv2_3983_4_122
Type: pfam
Location: 165744 - 166973 (+)
Type: pfam
Location: 165744 - 166973 (+)
Gene ID: HRGMv2_3983_4_123
Type: STP
Location: 167090 - 168052 (-)
Type: STP
Location: 167090 - 168052 (-)
Gene ID: HRGMv2_3983_4_124
Type: TC
Location: 168091 - 169998 (-)
Type: TC
Location: 168091 - 169998 (-)
Gene ID: HRGMv2_3983_4_125
Type: pfam
Location: 169991 - 171709 (-)
Type: pfam
Location: 169991 - 171709 (-)
Gene ID: HRGMv2_3983_4_126
Type: CAZyme
Location: 171958 - 173772 (-)
Type: CAZyme
Location: 171958 - 173772 (-)
Gene ID: HRGMv2_3983_4_127
Type: CAZyme
Location: 173795 - 175981 (-)
Type: CAZyme
Location: 173795 - 175981 (-)
Gene ID: HRGMv2_3983_4_128
Type: TF
Location: 176227 - 176748 (+)
Type: TF
Location: 176227 - 176748 (+)
Gene ID: HRGMv2_3983_4_129
Type: STP
Location: 176863 - 178026 (+)
Type: STP
Location: 176863 - 178026 (+)
Gene ID: HRGMv2_3983_4_130
Type: TC
Location: 178041 - 181544 (+)
Type: TC
Location: 178041 - 181544 (+)
Gene ID: HRGMv2_3983_4_131
Type: pfam
Location: 181559 - 183496 (+)
Type: pfam
Location: 181559 - 183496 (+)
Gene ID: HRGMv2_3983_4_132
Type: CAZyme
Location: 183588 - 187664 (-)
Type: CAZyme
Location: 183588 - 187664 (-)
Gene ID: HRGMv2_3983_4_133
Type: CAZyme
Location: 187743 - 189260 (-)
Type: CAZyme
Location: 187743 - 189260 (-)
Gene ID: HRGMv2_3983_4_134
Type: pfam
Location: 189311 - 190969 (-)
Type: pfam
Location: 189311 - 190969 (-)
Gene ID: HRGMv2_3983_4_135
Type: TC
Location: 190982 - 193717 (-)
Type: TC
Location: 190982 - 193717 (-)
Gene ID: HRGMv2_3983_4_136
Type: pfam
Location: 193755 - 195578 (-)
Type: pfam
Location: 193755 - 195578 (-)
Gene ID: HRGMv2_3983_4_137
Type: TC
Location: 195591 - 198752 (-)
Type: TC
Location: 195591 - 198752 (-)
Gene ID: HRGMv2_3983_4_138
Type: STP
Location: 198933 - 199463 (+)
Type: STP
Location: 198933 - 199463 (+)
Gene ID: HRGMv2_3983_4_139
Type: STP
Location: 199665 - 200600 (+)
Type: STP
Location: 199665 - 200600 (+)
Gene ID: HRGMv2_3983_4_140
Type: TC
Location: 200782 - 204147 (+)
Type: TC
Location: 200782 - 204147 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.