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Cluster: HRGMv2_3983_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3983_2 HRGMv2_3983_2_295 359994 360788 - 3.A.1.11.8
TC HRGMv2_3983_2 HRGMv2_3983_2_296 360782 361582 - 3.A.1.11.8
TC HRGMv2_3983_2 HRGMv2_3983_2_297 361594 362985 - 3.A.1.11.8
pfam HRGMv2_3983_2 HRGMv2_3983_2_298 363124 364224 + Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8 | DUF4369
CAZyme HRGMv2_3983_2 HRGMv2_3983_2_299 364435 366999 - GT35
CAZyme HRGMv2_3983_2 HRGMv2_3983_2_300 367036 368697 - GT3
TC HRGMv2_3983_2 HRGMv2_3983_2_301 368903 369364 - 3.A.2.2.2
TC HRGMv2_3983_2 HRGMv2_3983_2_302 369403 371220 - 3.A.2.2.2
pfam HRGMv2_3983_2 HRGMv2_3983_2_303 371217 371822 - ATP-synt_D
TC HRGMv2_3983_2 HRGMv2_3983_2_304 371866 373191 - 3.A.2.3.3
TC HRGMv2_3983_2 HRGMv2_3983_2_305 373225 374982 - 3.A.2.3.3
Gene ID: HRGMv2_3983_2_295
Type: TC
Location: 359994 - 360788 (-)
Gene ID: HRGMv2_3983_2_296
Type: TC
Location: 360782 - 361582 (-)
Gene ID: HRGMv2_3983_2_297
Type: TC
Location: 361594 - 362985 (-)
Gene ID: HRGMv2_3983_2_298
Type: pfam
Location: 363124 - 364224 (+)
Gene ID: HRGMv2_3983_2_299
Type: CAZyme
Location: 364435 - 366999 (-)
Gene ID: HRGMv2_3983_2_300
Type: CAZyme
Location: 367036 - 368697 (-)
Gene ID: HRGMv2_3983_2_301
Type: TC
Location: 368903 - 369364 (-)
Gene ID: HRGMv2_3983_2_302
Type: TC
Location: 369403 - 371220 (-)
Gene ID: HRGMv2_3983_2_303
Type: pfam
Location: 371217 - 371822 (-)
Gene ID: HRGMv2_3983_2_304
Type: TC
Location: 371866 - 373191 (-)
Gene ID: HRGMv2_3983_2_305
Type: TC
Location: 373225 - 374982 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_2_297 vegan > omnivore 1.14704 0.00229

🧭 Explore Read Mapping of CGC

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