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Cluster: HRGMv2_3983_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3983_2 HRGMv2_3983_2_279 337876 339192 + 2.A.1.7.5
TF HRGMv2_3983_2 HRGMv2_3983_2_280 339383 339940 + GerE
STP HRGMv2_3983_2 HRGMv2_3983_2_281 339997 340983 + FecR
TC HRGMv2_3983_2 HRGMv2_3983_2_282 341178 344528 + 1.B.14.6.13
TC HRGMv2_3983_2 HRGMv2_3983_2_283 344544 346124 + 8.A.46.2.2
pfam HRGMv2_3983_2 HRGMv2_3983_2_284 346155 347111 + GH18_BT1044-like
CAZyme HRGMv2_3983_2 HRGMv2_3983_2_285 347207 348826 + GH18
CAZyme HRGMv2_3983_2 HRGMv2_3983_2_286 348992 349924 + GH18
CAZyme HRGMv2_3983_2 HRGMv2_3983_2_287 350084 351016 + GH18
Gene ID: HRGMv2_3983_2_279
Type: TC
Location: 337876 - 339192 (+)
Gene ID: HRGMv2_3983_2_280
Type: TF
Location: 339383 - 339940 (+)
Gene ID: HRGMv2_3983_2_281
Type: STP
Location: 339997 - 340983 (+)
Gene ID: HRGMv2_3983_2_282
Type: TC
Location: 341178 - 344528 (+)
Gene ID: HRGMv2_3983_2_283
Type: TC
Location: 344544 - 346124 (+)
Gene ID: HRGMv2_3983_2_284
Type: pfam
Location: 346155 - 347111 (+)
Gene ID: HRGMv2_3983_2_285
Type: CAZyme
Location: 347207 - 348826 (+)
Gene ID: HRGMv2_3983_2_286
Type: CAZyme
Location: 348992 - 349924 (+)
Gene ID: HRGMv2_3983_2_287
Type: CAZyme
Location: 350084 - 351016 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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