Cluster: HRGMv2_3983_CGC138
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate: beta-mannan
- Genome ID: HRGMv2_3983
- CGC Family ID: CGCFAM_00333
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_59 | HRGMv2_3983_59_6 | 8681 | 11929 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3983_59 | HRGMv2_3983_59_7 | 11956 | 13767 | + | SusD_RagB | SusD-like_3 |
| pfam | HRGMv2_3983_59 | HRGMv2_3983_59_8 | 13818 | 14993 | + | TIG | SGBP_B_XBD |
| CAZyme | HRGMv2_3983_59 | HRGMv2_3983_59_9 | 15013 | 16095 | + | GH26 |
| CAZyme | HRGMv2_3983_59 | HRGMv2_3983_59_10 | 16113 | 17213 | + | GH26 |
| CAZyme | HRGMv2_3983_59 | HRGMv2_3983_59_11 | 17223 | 19430 | + | GH36 |
| CAZyme | HRGMv2_3983_59 | HRGMv2_3983_59_12 | 19474 | 20646 | + | GH130_1 |
| TC | HRGMv2_3983_59 | HRGMv2_3983_59_13 | 20676 | 22049 | + | 2.A.2.3.6 |
Gene ID: HRGMv2_3983_59_6
Type: TC
Location: 8681 - 11929 (+)
Type: TC
Location: 8681 - 11929 (+)
Gene ID: HRGMv2_3983_59_7
Type: pfam
Location: 11956 - 13767 (+)
Type: pfam
Location: 11956 - 13767 (+)
Gene ID: HRGMv2_3983_59_8
Type: pfam
Location: 13818 - 14993 (+)
Type: pfam
Location: 13818 - 14993 (+)
Gene ID: HRGMv2_3983_59_9
Type: CAZyme
Location: 15013 - 16095 (+)
Type: CAZyme
Location: 15013 - 16095 (+)
Gene ID: HRGMv2_3983_59_10
Type: CAZyme
Location: 16113 - 17213 (+)
Type: CAZyme
Location: 16113 - 17213 (+)
Gene ID: HRGMv2_3983_59_11
Type: CAZyme
Location: 17223 - 19430 (+)
Type: CAZyme
Location: 17223 - 19430 (+)
Gene ID: HRGMv2_3983_59_12
Type: CAZyme
Location: 19474 - 20646 (+)
Type: CAZyme
Location: 19474 - 20646 (+)
Gene ID: HRGMv2_3983_59_13
Type: TC
Location: 20676 - 22049 (+)
Type: TC
Location: 20676 - 22049 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_59_6 | vegan > omnivore | 2.64119 | 0.00229 |
| HRGMv2_3983_59_6 | vegetarian > omnivore | 1.38118 | 0.01175 |
| HRGMv2_3983_59_7 | vegan > omnivore | 2.35399 | 0.00229 |
| HRGMv2_3983_59_8 | vegan > omnivore | 2.35913 | 0.00229 |
| HRGMv2_3983_59_9 | vegan > omnivore | 2.26611 | 0.00229 |
| HRGMv2_3983_59_9 | vegetarian > omnivore | 1.02119 | 0.03246 |
| HRGMv2_3983_59_10 | vegan > omnivore | 1.90242 | 0.00229 |
| HRGMv2_3983_59_11 | vegan > omnivore | 1.08061 | 0.00229 |