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Cluster: HRGMv2_3983_CGC129

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_43 HRGMv2_3983_43_27 30559 31773 + GT2
STP HRGMv2_3983_43 HRGMv2_3983_43_28 31847 34582 + HATPase_c | HisKA | PAS | Response_reg
pfam HRGMv2_3983_43 HRGMv2_3983_43_29 34752 35852 + Exo_endo_phos
TC HRGMv2_3983_43 HRGMv2_3983_43_30 35946 39323 - 1.B.14.6.3
NULL(UNKNOWN) HRGMv2_3983_43 HRGMv2_3983_43_31 39573 42167 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3983_43 HRGMv2_3983_43_32 42181 44880 - TonB_dep_Rec_b-barrel | Plug | CarboxypepD_reg | CarbopepD_reg_2
TC HRGMv2_3983_43 HRGMv2_3983_43_33 45105 46793 - 3.A.1.120.6
Gene ID: HRGMv2_3983_43_27
Type: CAZyme
Location: 30559 - 31773 (+)
Gene ID: HRGMv2_3983_43_28
Type: STP
Location: 31847 - 34582 (+)
Gene ID: HRGMv2_3983_43_29
Type: pfam
Location: 34752 - 35852 (+)
Gene ID: HRGMv2_3983_43_30
Type: TC
Location: 35946 - 39323 (-)
Gene ID: HRGMv2_3983_43_31
Type:
Location: 39573 - 42167 (-)
Gene ID: HRGMv2_3983_43_32
Type: pfam
Location: 42181 - 44880 (-)
Gene ID: HRGMv2_3983_43_33
Type: TC
Location: 45105 - 46793 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_43_30 vegan > omnivore 2.96865 0.00229
HRGMv2_3983_43_30 vegetarian > omnivore 2.52906 0.02389

🧭 Explore Read Mapping of CGC

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