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Cluster: HRGMv2_3983_CGC119

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3983_33 HRGMv2_3983_33_44 47780 49234 + 2.A.68.1.2
STP HRGMv2_3983_33 HRGMv2_3983_33_45 49333 49920 + Sigma70_r2 | Sigma70_r4_2
STP HRGMv2_3983_33 HRGMv2_3983_33_46 49998 51020 + FecR
TC HRGMv2_3983_33 HRGMv2_3983_33_47 51155 54541 + 1.B.14.6.1
pfam HRGMv2_3983_33 HRGMv2_3983_33_48 54570 56384 + SusD_RagB | SusD-like_3
sulfatase HRGMv2_3983_33 HRGMv2_3983_33_49 56458 57897 + S1_7
CAZyme HRGMv2_3983_33 HRGMv2_3983_33_50 57899 59968 + GH2
Gene ID: HRGMv2_3983_33_44
Type: TC
Location: 47780 - 49234 (+)
Gene ID: HRGMv2_3983_33_45
Type: STP
Location: 49333 - 49920 (+)
Gene ID: HRGMv2_3983_33_46
Type: STP
Location: 49998 - 51020 (+)
Gene ID: HRGMv2_3983_33_47
Type: TC
Location: 51155 - 54541 (+)
Gene ID: HRGMv2_3983_33_48
Type: pfam
Location: 54570 - 56384 (+)
Gene ID: HRGMv2_3983_33_49
Type: sulfatase
Location: 56458 - 57897 (+)
Gene ID: HRGMv2_3983_33_50
Type: CAZyme
Location: 57899 - 59968 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_33_50 vegetarian > omnivore 1.02616 0.01613

🧭 Explore Read Mapping of CGC

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