Cluster: HRGMv2_3983_CGC113
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3983
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3983_29 | HRGMv2_3983_29_19 | 17702 | 19471 | + | GT83 |
| pfam | HRGMv2_3983_29 | HRGMv2_3983_29_20 | 19458 | 21434 | - | Sulfatase |
| pfam | HRGMv2_3983_29 | HRGMv2_3983_29_21 | 21473 | 21913 | - | GtrA_DPMS_TM |
| CAZyme | HRGMv2_3983_29 | HRGMv2_3983_29_22 | 21876 | 22832 | - | GT2 |
| CAZyme | HRGMv2_3983_29 | HRGMv2_3983_29_23 | 22829 | 23632 | - | CE4 |
| TC | HRGMv2_3983_29 | HRGMv2_3983_29_24 | 23648 | 25483 | - | 3.A.1.106.1 |
Gene ID: HRGMv2_3983_29_19
Type: CAZyme
Location: 17702 - 19471 (+)
Type: CAZyme
Location: 17702 - 19471 (+)
Gene ID: HRGMv2_3983_29_20
Type: pfam
Location: 19458 - 21434 (-)
Type: pfam
Location: 19458 - 21434 (-)
Gene ID: HRGMv2_3983_29_21
Type: pfam
Location: 21473 - 21913 (-)
Type: pfam
Location: 21473 - 21913 (-)
Gene ID: HRGMv2_3983_29_22
Type: CAZyme
Location: 21876 - 22832 (-)
Type: CAZyme
Location: 21876 - 22832 (-)
Gene ID: HRGMv2_3983_29_23
Type: CAZyme
Location: 22829 - 23632 (-)
Type: CAZyme
Location: 22829 - 23632 (-)
Gene ID: HRGMv2_3983_29_24
Type: TC
Location: 23648 - 25483 (-)
Type: TC
Location: 23648 - 25483 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3983_29_21 | vegan > omnivore | 1.41403 | 0.00229 |
| HRGMv2_3983_29_23 | vegan > omnivore | 1.04316 | 0.00229 |