Cluster: HRGMv2_3983_CGC109
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3983
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3983_26 | HRGMv2_3983_26_28 | 30537 | 31847 | + | 2.A.1.7.2 |
| pfam | HRGMv2_3983_26 | HRGMv2_3983_26_29 | 31886 | 33040 | + | GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg |
| CAZyme | HRGMv2_3983_26 | HRGMv2_3983_26_30 | 33176 | 34144 | - | GH43_29 |
| CAZyme | HRGMv2_3983_26 | HRGMv2_3983_26_31 | 34141 | 36123 | - | GH51_2 |
| CAZyme | HRGMv2_3983_26 | HRGMv2_3983_26_32 | 36150 | 37691 | - | GH43_4 |
| TF | HRGMv2_3983_26 | HRGMv2_3983_26_33 | 37847 | 42103 | + | HTH_AraC |
| pfam | HRGMv2_3983_26 | HRGMv2_3983_26_34 | 42232 | 44541 | + | Laminin_G_3 | Laminin_G_3 | Laminin_G_3 |
| TC | HRGMv2_3983_26 | HRGMv2_3983_26_35 | 44561 | 47689 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3983_26 | HRGMv2_3983_26_36 | 47702 | 49477 | + | SusD_RagB | SusD-like_3 |
| TC | HRGMv2_3983_26 | HRGMv2_3983_26_37 | 49488 | 52631 | + | 1.B.14.6.1 |
| pfam | HRGMv2_3983_26 | HRGMv2_3983_26_38 | 52655 | 54457 | + | SusD_RagB | SusD-like_3 |
| CAZyme | HRGMv2_3983_26 | HRGMv2_3983_26_39 | 54493 | 56418 | + | GH43_4 |
| sulfatase | HRGMv2_3983_26 | HRGMv2_3983_26_40 | 56589 | 57728 | + | S1_22 |
| TC | HRGMv2_3983_26 | HRGMv2_3983_26_41 | 57754 | 59448 | + | 2.A.21.3.19 |
Gene ID: HRGMv2_3983_26_28
Type: TC
Location: 30537 - 31847 (+)
Type: TC
Location: 30537 - 31847 (+)
Gene ID: HRGMv2_3983_26_29
Type: pfam
Location: 31886 - 33040 (+)
Type: pfam
Location: 31886 - 33040 (+)
Gene ID: HRGMv2_3983_26_30
Type: CAZyme
Location: 33176 - 34144 (-)
Type: CAZyme
Location: 33176 - 34144 (-)
Gene ID: HRGMv2_3983_26_31
Type: CAZyme
Location: 34141 - 36123 (-)
Type: CAZyme
Location: 34141 - 36123 (-)
Gene ID: HRGMv2_3983_26_32
Type: CAZyme
Location: 36150 - 37691 (-)
Type: CAZyme
Location: 36150 - 37691 (-)
Gene ID: HRGMv2_3983_26_33
Type: TF
Location: 37847 - 42103 (+)
Type: TF
Location: 37847 - 42103 (+)
Gene ID: HRGMv2_3983_26_34
Type: pfam
Location: 42232 - 44541 (+)
Type: pfam
Location: 42232 - 44541 (+)
Gene ID: HRGMv2_3983_26_35
Type: TC
Location: 44561 - 47689 (+)
Type: TC
Location: 44561 - 47689 (+)
Gene ID: HRGMv2_3983_26_36
Type: pfam
Location: 47702 - 49477 (+)
Type: pfam
Location: 47702 - 49477 (+)
Gene ID: HRGMv2_3983_26_37
Type: TC
Location: 49488 - 52631 (+)
Type: TC
Location: 49488 - 52631 (+)
Gene ID: HRGMv2_3983_26_38
Type: pfam
Location: 52655 - 54457 (+)
Type: pfam
Location: 52655 - 54457 (+)
Gene ID: HRGMv2_3983_26_39
Type: CAZyme
Location: 54493 - 56418 (+)
Type: CAZyme
Location: 54493 - 56418 (+)
Gene ID: HRGMv2_3983_26_40
Type: sulfatase
Location: 56589 - 57728 (+)
Type: sulfatase
Location: 56589 - 57728 (+)
Gene ID: HRGMv2_3983_26_41
Type: TC
Location: 57754 - 59448 (+)
Type: TC
Location: 57754 - 59448 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides sp014750685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.