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Cluster: HRGMv2_3983_CGC108

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_25 HRGMv2_3983_25_3 1463 2716 + GH109
STP HRGMv2_3983_25 HRGMv2_3983_25_4 2688 3248 - Sigma70_r2 | Sigma70_r4_2
CAZyme HRGMv2_3983_25 HRGMv2_3983_25_5 3469 6336 - CBM32
CAZyme HRGMv2_3983_25 HRGMv2_3983_25_6 6505 7383 - CBM32
pfam HRGMv2_3983_25 HRGMv2_3983_25_7 7396 9300 - SusD_RagB | SusD-like_3
TC HRGMv2_3983_25 HRGMv2_3983_25_8 9312 12734 - 1.B.14.6.1
STP HRGMv2_3983_25 HRGMv2_3983_25_9 12753 13664 - FecR
CAZyme HRGMv2_3983_25 HRGMv2_3983_25_10 14027 15874 + GH110
STP HRGMv2_3983_25 HRGMv2_3983_25_11 15961 16506 - Sigma70_r2 | Sigma70_r4_2
STP HRGMv2_3983_25 HRGMv2_3983_25_12 17507 18445 + FecR
TC HRGMv2_3983_25 HRGMv2_3983_25_13 18456 21815 + 1.B.14.6.1
pfam HRGMv2_3983_25 HRGMv2_3983_25_14 21847 23787 + SusD_RagB | SusD-like_3
pfam HRGMv2_3983_25 HRGMv2_3983_25_15 23807 25213 + F5_F8_type_C | BT_3987-like_N | BT_3987-like_N
CAZyme HRGMv2_3983_25 HRGMv2_3983_25_16 25234 27945 + CBM32
CAZyme HRGMv2_3983_25 HRGMv2_3983_25_17 28041 30440 + CBM32
CAZyme HRGMv2_3983_25 HRGMv2_3983_25_18 30857 32263 + GH109
TC HRGMv2_3983_25 HRGMv2_3983_25_19 32381 33271 + 2.A.115.1.1
CAZyme HRGMv2_3983_25 HRGMv2_3983_25_20 33343 36684 + GH2
pfam HRGMv2_3983_25 HRGMv2_3983_25_21 36715 37803 + APH
pfam HRGMv2_3983_25 HRGMv2_3983_25_22 37862 38527 - DUF3256
TC HRGMv2_3983_25 HRGMv2_3983_25_23 38529 39434 - 2.A.7.3.57
Gene ID: HRGMv2_3983_25_3
Type: CAZyme
Location: 1463 - 2716 (+)
Gene ID: HRGMv2_3983_25_4
Type: STP
Location: 2688 - 3248 (-)
Gene ID: HRGMv2_3983_25_5
Type: CAZyme
Location: 3469 - 6336 (-)
Gene ID: HRGMv2_3983_25_6
Type: CAZyme
Location: 6505 - 7383 (-)
Gene ID: HRGMv2_3983_25_7
Type: pfam
Location: 7396 - 9300 (-)
Gene ID: HRGMv2_3983_25_8
Type: TC
Location: 9312 - 12734 (-)
Gene ID: HRGMv2_3983_25_9
Type: STP
Location: 12753 - 13664 (-)
Gene ID: HRGMv2_3983_25_10
Type: CAZyme
Location: 14027 - 15874 (+)
Gene ID: HRGMv2_3983_25_11
Type: STP
Location: 15961 - 16506 (-)
Gene ID: HRGMv2_3983_25_12
Type: STP
Location: 17507 - 18445 (+)
Gene ID: HRGMv2_3983_25_13
Type: TC
Location: 18456 - 21815 (+)
Gene ID: HRGMv2_3983_25_14
Type: pfam
Location: 21847 - 23787 (+)
Gene ID: HRGMv2_3983_25_15
Type: pfam
Location: 23807 - 25213 (+)
Gene ID: HRGMv2_3983_25_16
Type: CAZyme
Location: 25234 - 27945 (+)
Gene ID: HRGMv2_3983_25_17
Type: CAZyme
Location: 28041 - 30440 (+)
Gene ID: HRGMv2_3983_25_18
Type: CAZyme
Location: 30857 - 32263 (+)
Gene ID: HRGMv2_3983_25_19
Type: TC
Location: 32381 - 33271 (+)
Gene ID: HRGMv2_3983_25_20
Type: CAZyme
Location: 33343 - 36684 (+)
Gene ID: HRGMv2_3983_25_21
Type: pfam
Location: 36715 - 37803 (+)
Gene ID: HRGMv2_3983_25_22
Type: pfam
Location: 37862 - 38527 (-)
Gene ID: HRGMv2_3983_25_23
Type: TC
Location: 38529 - 39434 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_25_3 vegan > omnivore 1.29209 0.00229
HRGMv2_3983_25_4 vegan > omnivore 1.00769 0.00229
HRGMv2_3983_25_11 vegan > omnivore 1.63654 0.00229
HRGMv2_3983_25_17 vegan > omnivore 1.40780 0.00229

🧭 Explore Read Mapping of CGC

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