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Cluster: HRGMv2_3983_CGC103

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3983_22 HRGMv2_3983_22_59 75250 78561 + 1.B.14.6.1
TC HRGMv2_3983_22 HRGMv2_3983_22_60 78574 80379 + 8.A.46.1.3
CAZyme HRGMv2_3983_22 HRGMv2_3983_22_61 80414 82342 + GH16_3
pfam HRGMv2_3983_22 HRGMv2_3983_22_62 82382 83734 + LRR_5 | DUF4988
sulfatase HRGMv2_3983_22 HRGMv2_3983_22_63 84140 85723 + S1_11
CAZyme HRGMv2_3983_22 HRGMv2_3983_22_64 85737 88070 + GH20
CAZyme HRGMv2_3983_22 HRGMv2_3983_22_65 88098 91172 + GH2
CAZyme HRGMv2_3983_22 HRGMv2_3983_22_66 91322 93139 + GH29
TC HRGMv2_3983_22 HRGMv2_3983_22_67 93279 94454 + 1.A.23.4.5
Gene ID: HRGMv2_3983_22_59
Type: TC
Location: 75250 - 78561 (+)
Gene ID: HRGMv2_3983_22_60
Type: TC
Location: 78574 - 80379 (+)
Gene ID: HRGMv2_3983_22_61
Type: CAZyme
Location: 80414 - 82342 (+)
Gene ID: HRGMv2_3983_22_62
Type: pfam
Location: 82382 - 83734 (+)
Gene ID: HRGMv2_3983_22_63
Type: sulfatase
Location: 84140 - 85723 (+)
Gene ID: HRGMv2_3983_22_64
Type: CAZyme
Location: 85737 - 88070 (+)
Gene ID: HRGMv2_3983_22_65
Type: CAZyme
Location: 88098 - 91172 (+)
Gene ID: HRGMv2_3983_22_66
Type: CAZyme
Location: 91322 - 93139 (+)
Gene ID: HRGMv2_3983_22_67
Type: TC
Location: 93279 - 94454 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_22_66 vegetarian > omnivore 1.03278 0.03246

🧭 Explore Read Mapping of CGC

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