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Cluster: HRGMv2_3983_CGC102

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3983_22 HRGMv2_3983_22_32 31570 33570 + GH13_14
TF HRGMv2_3983_22 HRGMv2_3983_22_33 33574 37692 - HTH_AraC | HTH_AraC
NULL(UNKNOWN) HRGMv2_3983_22 HRGMv2_3983_22_34 37790 37882 - NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3983_22 HRGMv2_3983_22_35 38064 41162 + 1.B.14.6.1
TC HRGMv2_3983_22 HRGMv2_3983_22_36 41191 43092 + 8.A.46.1.6
CAZyme HRGMv2_3983_22 HRGMv2_3983_22_37 43319 44965 + CE20 | CE20
TC HRGMv2_3983_22 HRGMv2_3983_22_38 44987 46471 + 2.A.2.3.6
CAZyme HRGMv2_3983_22 HRGMv2_3983_22_39 46497 47633 + GH10
CAZyme HRGMv2_3983_22 HRGMv2_3983_22_40 47661 48638 + GH43_1
CAZyme HRGMv2_3983_22 HRGMv2_3983_22_41 48789 50927 + GH67
TC HRGMv2_3983_22 HRGMv2_3983_22_42 50998 52452 + 3.A.1.131.2
Gene ID: HRGMv2_3983_22_32
Type: CAZyme
Location: 31570 - 33570 (+)
Gene ID: HRGMv2_3983_22_33
Type: TF
Location: 33574 - 37692 (-)
Gene ID: HRGMv2_3983_22_34
Type:
Location: 37790 - 37882 (-)
Gene ID: HRGMv2_3983_22_35
Type: TC
Location: 38064 - 41162 (+)
Gene ID: HRGMv2_3983_22_36
Type: TC
Location: 41191 - 43092 (+)
Gene ID: HRGMv2_3983_22_37
Type: CAZyme
Location: 43319 - 44965 (+)
Gene ID: HRGMv2_3983_22_38
Type: TC
Location: 44987 - 46471 (+)
Gene ID: HRGMv2_3983_22_39
Type: CAZyme
Location: 46497 - 47633 (+)
Gene ID: HRGMv2_3983_22_40
Type: CAZyme
Location: 47661 - 48638 (+)
Gene ID: HRGMv2_3983_22_41
Type: CAZyme
Location: 48789 - 50927 (+)
Gene ID: HRGMv2_3983_22_42
Type: TC
Location: 50998 - 52452 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3983_22_37 vegan > omnivore 1.34841 0.00229
HRGMv2_3983_22_39 vegan > omnivore 1.60511 0.00229
HRGMv2_3983_22_39 vegetarian > omnivore 1.76084 0.01498

🧭 Explore Read Mapping of CGC

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