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Cluster: HRGMv2_3979_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3979_4 HRGMv2_3979_4_147 185693 186298 - 9.B.18.1.2
CAZyme HRGMv2_3979_4 HRGMv2_3979_4_148 186333 187403 - GT2
pfam HRGMv2_3979_4 HRGMv2_3979_4_149 187390 188664 - UDPG_MGDP_dh | UDPG_MGDP_dh_C | UDPG_MGDP_dh_N
TC HRGMv2_3979_4 HRGMv2_3979_4_150 188759 190720 - 9.B.18.2.1
pfam HRGMv2_3979_4 HRGMv2_3979_4_151 191018 192484 + Endonuclease_1
pfam HRGMv2_3979_4 HRGMv2_3979_4_152 192481 193239 + PseudoU_synth_1 | PseudoU_synth_1
TC HRGMv2_3979_4 HRGMv2_3979_4_153 193272 194153 + 2.A.7.3.57
Gene ID: HRGMv2_3979_4_147
Type: TC
Location: 185693 - 186298 (-)
Gene ID: HRGMv2_3979_4_148
Type: CAZyme
Location: 186333 - 187403 (-)
Gene ID: HRGMv2_3979_4_149
Type: pfam
Location: 187390 - 188664 (-)
Gene ID: HRGMv2_3979_4_150
Type: TC
Location: 188759 - 190720 (-)
Gene ID: HRGMv2_3979_4_151
Type: pfam
Location: 191018 - 192484 (+)
Gene ID: HRGMv2_3979_4_152
Type: pfam
Location: 192481 - 193239 (+)
Gene ID: HRGMv2_3979_4_153
Type: TC
Location: 193272 - 194153 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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