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Cluster: HRGMv2_3979_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3979_34 HRGMv2_3979_34_57 55912 56832 + GH73
TC HRGMv2_3979_34 HRGMv2_3979_34_58 56922 58544 + 3.A.1.121.4
TC HRGMv2_3979_34 HRGMv2_3979_34_59 58628 59248 + 3.A.8.1.1
TC HRGMv2_3979_34 HRGMv2_3979_34_60 59283 60470 + 3.A.5.8.1
pfam HRGMv2_3979_34 HRGMv2_3979_34_61 60467 61768 + Mur_ligase_C | Mur_ligase_M
sulfatase HRGMv2_3979_34 HRGMv2_3979_34_62 62035 63117 + S1_22
TC HRGMv2_3979_34 HRGMv2_3979_34_63 63214 64440 + 2.A.1.7.10
pfam HRGMv2_3979_34 HRGMv2_3979_34_64 64516 65676 + GHMP_kinases_N | GHMP_kinases_C | GalKase_gal_bdg
CAZyme HRGMv2_3979_34 HRGMv2_3979_34_65 65938 66702 + CE4
Gene ID: HRGMv2_3979_34_57
Type: CAZyme
Location: 55912 - 56832 (+)
Gene ID: HRGMv2_3979_34_58
Type: TC
Location: 56922 - 58544 (+)
Gene ID: HRGMv2_3979_34_59
Type: TC
Location: 58628 - 59248 (+)
Gene ID: HRGMv2_3979_34_60
Type: TC
Location: 59283 - 60470 (+)
Gene ID: HRGMv2_3979_34_61
Type: pfam
Location: 60467 - 61768 (+)
Gene ID: HRGMv2_3979_34_62
Type: sulfatase
Location: 62035 - 63117 (+)
Gene ID: HRGMv2_3979_34_63
Type: TC
Location: 63214 - 64440 (+)
Gene ID: HRGMv2_3979_34_64
Type: pfam
Location: 64516 - 65676 (+)
Gene ID: HRGMv2_3979_34_65
Type: CAZyme
Location: 65938 - 66702 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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