Cluster: HRGMv2_3978_CGC41
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3978
- CGC Family ID: CGCFAM_00960
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3978_30 | HRGMv2_3978_30_1 | 3 | 860 | - | GH13_31 |
| TF | HRGMv2_3978_30 | HRGMv2_3978_30_2 | 892 | 1905 | - | LacI |
| TC | HRGMv2_3978_30 | HRGMv2_3978_30_3 | 1914 | 3254 | - | 3.A.1.1.44 |
Gene ID: HRGMv2_3978_30_1
Type: CAZyme
Location: 3 - 860 (-)
Type: CAZyme
Location: 3 - 860 (-)
Gene ID: HRGMv2_3978_30_2
Type: TF
Location: 892 - 1905 (-)
Type: TF
Location: 892 - 1905 (-)
Gene ID: HRGMv2_3978_30_3
Type: TC
Location: 1914 - 3254 (-)
Type: TC
Location: 1914 - 3254 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Paramuribaculum
Species
Paramuribaculum sp009775605
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3978_30_1 | vegan > omnivore | 1.88366 | 0.04753 |
| HRGMv2_3978_30_1 | vegetarian > omnivore | 1.12724 | 0.02034 |
| HRGMv2_3978_30_2 | vegetarian > omnivore | 1.53598 | 0.02034 |
| HRGMv2_3978_30_3 | vegetarian > omnivore | 1.62566 | 0.02034 |