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Cluster: HRGMv2_3978_CGC40

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3978_22 HRGMv2_3978_22_10 10084 11550 + GH53
TF HRGMv2_3978_22 HRGMv2_3978_22_11 11748 15674 + HTH_AraC
TC HRGMv2_3978_22 HRGMv2_3978_22_12 15890 18859 + 1.B.14.6.1
TC HRGMv2_3978_22 HRGMv2_3978_22_13 18870 20483 + 8.A.46.1.1
pfam HRGMv2_3978_22 HRGMv2_3978_22_14 20493 22202 + SusE | DUF5111 | DUF5114
CAZyme HRGMv2_3978_22 HRGMv2_3978_22_15 22213 23271 + GH53
CAZyme HRGMv2_3978_22 HRGMv2_3978_22_16 23277 25706 + GH2
Gene ID: HRGMv2_3978_22_10
Type: CAZyme
Location: 10084 - 11550 (+)
Gene ID: HRGMv2_3978_22_11
Type: TF
Location: 11748 - 15674 (+)
Gene ID: HRGMv2_3978_22_12
Type: TC
Location: 15890 - 18859 (+)
Gene ID: HRGMv2_3978_22_13
Type: TC
Location: 18870 - 20483 (+)
Gene ID: HRGMv2_3978_22_14
Type: pfam
Location: 20493 - 22202 (+)
Gene ID: HRGMv2_3978_22_15
Type: CAZyme
Location: 22213 - 23271 (+)
Gene ID: HRGMv2_3978_22_16
Type: CAZyme
Location: 23277 - 25706 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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