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Cluster: HRGMv2_3978_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3978_1 HRGMv2_3978_1_124 136881 139226 + GH92
TC HRGMv2_3978_1 HRGMv2_3978_1_125 139229 140362 + 2.A.1.7.17
TC HRGMv2_3978_1 HRGMv2_3978_1_126 140447 141853 + 2.A.25.1.5
TF HRGMv2_3978_1 HRGMv2_3978_1_127 142166 143200 - MarR
pfam HRGMv2_3978_1 HRGMv2_3978_1_128 143238 143615 - SLFN_AlbA_2
CAZyme HRGMv2_3978_1 HRGMv2_3978_1_129 144203 146470 - GH95
CAZyme HRGMv2_3978_1 HRGMv2_3978_1_130 146687 148558 - CBM32 | GH29
Gene ID: HRGMv2_3978_1_124
Type: CAZyme
Location: 136881 - 139226 (+)
Gene ID: HRGMv2_3978_1_125
Type: TC
Location: 139229 - 140362 (+)
Gene ID: HRGMv2_3978_1_126
Type: TC
Location: 140447 - 141853 (+)
Gene ID: HRGMv2_3978_1_127
Type: TF
Location: 142166 - 143200 (-)
Gene ID: HRGMv2_3978_1_128
Type: pfam
Location: 143238 - 143615 (-)
Gene ID: HRGMv2_3978_1_129
Type: CAZyme
Location: 144203 - 146470 (-)
Gene ID: HRGMv2_3978_1_130
Type: CAZyme
Location: 146687 - 148558 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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