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Cluster: HRGMv2_3978_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3978_5 HRGMv2_3978_5_73 107632 109119 + 2.A.1.1.3
pfam HRGMv2_3978_5 HRGMv2_3978_5_74 109365 111212 - GIY-YIG | UvrC_RNaseH_dom | HHH_5 | UvrC_RNaseH
STP HRGMv2_3978_5 HRGMv2_3978_5_75 111267 111785 - Pribosyltran
TC HRGMv2_3978_5 HRGMv2_3978_5_76 111864 113747 - 1.C.39.4.5
pfam HRGMv2_3978_5 HRGMv2_3978_5_77 113759 114187 - YbeY
CAZyme HRGMv2_3978_5 HRGMv2_3978_5_78 114720 115493 + GT2
pfam HRGMv2_3978_5 HRGMv2_3978_5_79 115490 116272 + Kdo
CAZyme HRGMv2_3978_5 HRGMv2_3978_5_80 116294 117328 + GT113
Gene ID: HRGMv2_3978_5_73
Type: TC
Location: 107632 - 109119 (+)
Gene ID: HRGMv2_3978_5_74
Type: pfam
Location: 109365 - 111212 (-)
Gene ID: HRGMv2_3978_5_75
Type: STP
Location: 111267 - 111785 (-)
Gene ID: HRGMv2_3978_5_76
Type: TC
Location: 111864 - 113747 (-)
Gene ID: HRGMv2_3978_5_77
Type: pfam
Location: 113759 - 114187 (-)
Gene ID: HRGMv2_3978_5_78
Type: CAZyme
Location: 114720 - 115493 (+)
Gene ID: HRGMv2_3978_5_79
Type: pfam
Location: 115490 - 116272 (+)
Gene ID: HRGMv2_3978_5_80
Type: CAZyme
Location: 116294 - 117328 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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