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Cluster: HRGMv2_3978_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3978_5 HRGMv2_3978_5_39 52345 55419 - CE20
pfam HRGMv2_3978_5 HRGMv2_3978_5_40 55436 56632 - GlcNAc_2-epim
pfam HRGMv2_3978_5 HRGMv2_3978_5_41 56643 57566 - DHDPS
TC HRGMv2_3978_5 HRGMv2_3978_5_42 57619 58902 - 2.A.1.14.25
TC HRGMv2_3978_5 HRGMv2_3978_5_43 59054 60229 + 1.A.23.4.5
pfam HRGMv2_3978_5 HRGMv2_3978_5_44 60665 62635 - SusD-like | SusD-like | SusD-like_2 | SusD-like_2
TC HRGMv2_3978_5 HRGMv2_3978_5_45 62663 66133 - 1.B.14.6.2
NULL(UNKNOWN) HRGMv2_3978_5 HRGMv2_3978_5_46 66167 66523 + NULL(UNKNOWN)
[View Structural Homologs]
peptidase HRGMv2_3978_5 HRGMv2_3978_5_47 66547 69906 + S41.005
TC HRGMv2_3978_5 HRGMv2_3978_5_48 70057 72642 + 9.B.144.1.4
Gene ID: HRGMv2_3978_5_39
Type: CAZyme
Location: 52345 - 55419 (-)
Gene ID: HRGMv2_3978_5_40
Type: pfam
Location: 55436 - 56632 (-)
Gene ID: HRGMv2_3978_5_41
Type: pfam
Location: 56643 - 57566 (-)
Gene ID: HRGMv2_3978_5_42
Type: TC
Location: 57619 - 58902 (-)
Gene ID: HRGMv2_3978_5_43
Type: TC
Location: 59054 - 60229 (+)
Gene ID: HRGMv2_3978_5_44
Type: pfam
Location: 60665 - 62635 (-)
Gene ID: HRGMv2_3978_5_45
Type: TC
Location: 62663 - 66133 (-)
Gene ID: HRGMv2_3978_5_46
Type:
Location: 66167 - 66523 (+)
Gene ID: HRGMv2_3978_5_47
Type: peptidase
Location: 66547 - 69906 (+)
Gene ID: HRGMv2_3978_5_48
Type: TC
Location: 70057 - 72642 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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