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Cluster: HRGMv2_3978_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3978_1 HRGMv2_3978_1_10 8741 10543 - 4.C.1.1.14
CAZyme HRGMv2_3978_1 HRGMv2_3978_1_11 10557 11570 - GT2
CAZyme HRGMv2_3978_1 HRGMv2_3978_1_12 11665 12900 + GT4
CAZyme HRGMv2_3978_1 HRGMv2_3978_1_13 12897 13865 + GT2
pfam HRGMv2_3978_1 HRGMv2_3978_1_14 13881 14969 - DUF4369
pfam HRGMv2_3978_1 HRGMv2_3978_1_15 15017 16120 - Thioredoxin | AhpC-TSA | Redoxin | Thioredoxin_2 | Thioredoxin_8
CAZyme HRGMv2_3978_1 HRGMv2_3978_1_16 16193 17158 - GT2
Gene ID: HRGMv2_3978_1_10
Type: TC
Location: 8741 - 10543 (-)
Gene ID: HRGMv2_3978_1_11
Type: CAZyme
Location: 10557 - 11570 (-)
Gene ID: HRGMv2_3978_1_12
Type: CAZyme
Location: 11665 - 12900 (+)
Gene ID: HRGMv2_3978_1_13
Type: CAZyme
Location: 12897 - 13865 (+)
Gene ID: HRGMv2_3978_1_14
Type: pfam
Location: 13881 - 14969 (-)
Gene ID: HRGMv2_3978_1_15
Type: pfam
Location: 15017 - 16120 (-)
Gene ID: HRGMv2_3978_1_16
Type: CAZyme
Location: 16193 - 17158 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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