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Cluster: HRGMv2_3977_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3977_52 HRGMv2_3977_52_3 1505 2704 + 1.A.23.4.5
pfam HRGMv2_3977_52 HRGMv2_3977_52_4 2716 3927 - GlcNAc_2-epim
TC HRGMv2_3977_52 HRGMv2_3977_52_5 3938 5371 - 2.A.2.3.6
TF HRGMv2_3977_52 HRGMv2_3977_52_6 5394 6269 - HTH_AraC | HTH_AraC
CAZyme HRGMv2_3977_52 HRGMv2_3977_52_7 6272 7438 - GH130_1
CAZyme HRGMv2_3977_52 HRGMv2_3977_52_8 7479 9773 - GH26 | GH5_7
CAZyme HRGMv2_3977_52 HRGMv2_3977_52_9 9786 11285 - GH28
CAZyme HRGMv2_3977_52 HRGMv2_3977_52_10 11304 13583 - GH31
Gene ID: HRGMv2_3977_52_3
Type: TC
Location: 1505 - 2704 (+)
Gene ID: HRGMv2_3977_52_4
Type: pfam
Location: 2716 - 3927 (-)
Gene ID: HRGMv2_3977_52_5
Type: TC
Location: 3938 - 5371 (-)
Gene ID: HRGMv2_3977_52_6
Type: TF
Location: 5394 - 6269 (-)
Gene ID: HRGMv2_3977_52_7
Type: CAZyme
Location: 6272 - 7438 (-)
Gene ID: HRGMv2_3977_52_8
Type: CAZyme
Location: 7479 - 9773 (-)
Gene ID: HRGMv2_3977_52_9
Type: CAZyme
Location: 9786 - 11285 (-)
Gene ID: HRGMv2_3977_52_10
Type: CAZyme
Location: 11304 - 13583 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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