Cluster: HRGMv2_3902_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3902
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3902_7 | HRGMv2_3902_7_21 | 20164 | 25872 | + | GH89 |
| pfam | HRGMv2_3902_7 | HRGMv2_3902_7_22 | 25949 | 26608 | - | DUF2461 |
| NULL(UNKNOWN) | HRGMv2_3902_7 | HRGMv2_3902_7_23 | 26744 | 27187 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3902_7 | HRGMv2_3902_7_24 | 27197 | 28855 | + | GH20 |
| pfam | HRGMv2_3902_7 | HRGMv2_3902_7_25 | 29005 | 29982 | - | PFK |
| TC | HRGMv2_3902_7 | HRGMv2_3902_7_26 | 30007 | 31404 | - | 2.A.62.1.2 |
Gene ID: HRGMv2_3902_7_21
Type: CAZyme
Location: 20164 - 25872 (+)
Type: CAZyme
Location: 20164 - 25872 (+)
Gene ID: HRGMv2_3902_7_22
Type: pfam
Location: 25949 - 26608 (-)
Type: pfam
Location: 25949 - 26608 (-)
Gene ID: HRGMv2_3902_7_23
Type:
Location: 26744 - 27187 (+)
Type:
Location: 26744 - 27187 (+)
Gene ID: HRGMv2_3902_7_24
Type: CAZyme
Location: 27197 - 28855 (+)
Type: CAZyme
Location: 27197 - 28855 (+)
Gene ID: HRGMv2_3902_7_25
Type: pfam
Location: 29005 - 29982 (-)
Type: pfam
Location: 29005 - 29982 (-)
Gene ID: HRGMv2_3902_7_26
Type: TC
Location: 30007 - 31404 (-)
Type: TC
Location: 30007 - 31404 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.