Cluster: HRGMv2_3902_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3902
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3902_88 | HRGMv2_3902_88_2 | 3148 | 4269 | - | GT19 |
| pfam | HRGMv2_3902_88 | HRGMv2_3902_88_3 | 4266 | 5021 | - | SurE |
| TC | HRGMv2_3902_88 | HRGMv2_3902_88_4 | 5370 | 6137 | + | 8.A.3.2.3 |
| pfam | HRGMv2_3902_88 | HRGMv2_3902_88_5 | 6328 | 7221 | + | ParBc | HTH_ParB | ParB_dimer |
| pfam | HRGMv2_3902_88 | HRGMv2_3902_88_6 | 7403 | 8269 | + | DUF5683 |
| CAZyme | HRGMv2_3902_88 | HRGMv2_3902_88_7 | 8279 | 9724 | + | GH23 |
Gene ID: HRGMv2_3902_88_2
Type: CAZyme
Location: 3148 - 4269 (-)
Type: CAZyme
Location: 3148 - 4269 (-)
Gene ID: HRGMv2_3902_88_3
Type: pfam
Location: 4266 - 5021 (-)
Type: pfam
Location: 4266 - 5021 (-)
Gene ID: HRGMv2_3902_88_4
Type: TC
Location: 5370 - 6137 (+)
Type: TC
Location: 5370 - 6137 (+)
Gene ID: HRGMv2_3902_88_5
Type: pfam
Location: 6328 - 7221 (+)
Type: pfam
Location: 6328 - 7221 (+)
Gene ID: HRGMv2_3902_88_6
Type: pfam
Location: 7403 - 8269 (+)
Type: pfam
Location: 7403 - 8269 (+)
Gene ID: HRGMv2_3902_88_7
Type: CAZyme
Location: 8279 - 9724 (+)
Type: CAZyme
Location: 8279 - 9724 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Alloprevotella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.