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Cluster: HRGMv2_3902_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3902_42 HRGMv2_3902_42_2 892 2094 - 2.A.1.7.10
pfam HRGMv2_3902_42 HRGMv2_3902_42_3 2224 3513 - Arf | Ras | MMR_HSR1 | GTP-bdg_N | GTP-bdg_M
pfam HRGMv2_3902_42 HRGMv2_3902_42_4 3810 4193 - C_GCAxxG_C_C
CAZyme HRGMv2_3902_42 HRGMv2_3902_42_5 4296 5315 - GH2
TF HRGMv2_3902_42 HRGMv2_3902_42_6 5361 5708 - MarR
pfam HRGMv2_3902_42 HRGMv2_3902_42_7 5730 6338 - Thioredoxin | AhpC-TSA | OST3_OST6 | Thioredoxin_2
TC HRGMv2_3902_42 HRGMv2_3902_42_8 6472 9651 - 1.B.14.6.3
NULL(UNKNOWN) HRGMv2_3902_42 HRGMv2_3902_42_9 9686 9961 - NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3902_42 HRGMv2_3902_42_10 10033 11229 - Phosphodiest
CAZyme HRGMv2_3902_42 HRGMv2_3902_42_11 11449 15342 - GH31_18
Gene ID: HRGMv2_3902_42_2
Type: TC
Location: 892 - 2094 (-)
Gene ID: HRGMv2_3902_42_3
Type: pfam
Location: 2224 - 3513 (-)
Gene ID: HRGMv2_3902_42_4
Type: pfam
Location: 3810 - 4193 (-)
Gene ID: HRGMv2_3902_42_5
Type: CAZyme
Location: 4296 - 5315 (-)
Gene ID: HRGMv2_3902_42_6
Type: TF
Location: 5361 - 5708 (-)
Gene ID: HRGMv2_3902_42_7
Type: pfam
Location: 5730 - 6338 (-)
Gene ID: HRGMv2_3902_42_8
Type: TC
Location: 6472 - 9651 (-)
Gene ID: HRGMv2_3902_42_9
Type:
Location: 9686 - 9961 (-)
Gene ID: HRGMv2_3902_42_10
Type: pfam
Location: 10033 - 11229 (-)
Gene ID: HRGMv2_3902_42_11
Type: CAZyme
Location: 11449 - 15342 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Alloprevotella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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