Cluster: HRGMv2_3901_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3901
- Continent: Africa
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3901_12 | HRGMv2_3901_12_12 | 12588 | 14540 | + | GH93 |
| TF | HRGMv2_3901_12 | HRGMv2_3901_12_13 | 14559 | 18629 | + | HTH_AraC |
| sulfatase | HRGMv2_3901_12 | HRGMv2_3901_12_14 | 18641 | 19780 | + | S1_22 |
| CAZyme | HRGMv2_3901_12 | HRGMv2_3901_12_15 | 19777 | 20745 | + | GH43_31 |
| TC | HRGMv2_3901_12 | HRGMv2_3901_12_16 | 20837 | 22159 | - | 2.A.1.7.11 |
Gene ID: HRGMv2_3901_12_12
Type: CAZyme
Location: 12588 - 14540 (+)
Type: CAZyme
Location: 12588 - 14540 (+)
Gene ID: HRGMv2_3901_12_13
Type: TF
Location: 14559 - 18629 (+)
Type: TF
Location: 14559 - 18629 (+)
Gene ID: HRGMv2_3901_12_14
Type: sulfatase
Location: 18641 - 19780 (+)
Type: sulfatase
Location: 18641 - 19780 (+)
Gene ID: HRGMv2_3901_12_15
Type: CAZyme
Location: 19777 - 20745 (+)
Type: CAZyme
Location: 19777 - 20745 (+)
Gene ID: HRGMv2_3901_12_16
Type: TC
Location: 20837 - 22159 (-)
Type: TC
Location: 20837 - 22159 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Limisoma
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.