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Cluster: HRGMv2_3901_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3901_5 HRGMv2_3901_5_2 284 2602 - GH115
CAZyme HRGMv2_3901_5 HRGMv2_3901_5_3 2599 3912 - GH43_24
CAZyme HRGMv2_3901_5 HRGMv2_3901_5_4 3934 4890 - GH43_29
CAZyme HRGMv2_3901_5 HRGMv2_3901_5_5 4939 6501 - GH30_4
CAZyme HRGMv2_3901_5 HRGMv2_3901_5_6 6498 8555 - PL27
CAZyme HRGMv2_3901_5 HRGMv2_3901_5_7 8575 9708 - GH43_24
pfam HRGMv2_3901_5 HRGMv2_3901_5_8 9838 11856 - SusD_RagB | SusD-like_3
TC HRGMv2_3901_5 HRGMv2_3901_5_9 11900 15271 - 1.B.14.6.1
TF HRGMv2_3901_5 HRGMv2_3901_5_10 15660 19721 + HTH_AraC
CAZyme HRGMv2_3901_5 HRGMv2_3901_5_11 19729 20721 + GH43_19
Gene ID: HRGMv2_3901_5_2
Type: CAZyme
Location: 284 - 2602 (-)
Gene ID: HRGMv2_3901_5_3
Type: CAZyme
Location: 2599 - 3912 (-)
Gene ID: HRGMv2_3901_5_4
Type: CAZyme
Location: 3934 - 4890 (-)
Gene ID: HRGMv2_3901_5_5
Type: CAZyme
Location: 4939 - 6501 (-)
Gene ID: HRGMv2_3901_5_6
Type: CAZyme
Location: 6498 - 8555 (-)
Gene ID: HRGMv2_3901_5_7
Type: CAZyme
Location: 8575 - 9708 (-)
Gene ID: HRGMv2_3901_5_8
Type: pfam
Location: 9838 - 11856 (-)
Gene ID: HRGMv2_3901_5_9
Type: TC
Location: 11900 - 15271 (-)
Gene ID: HRGMv2_3901_5_10
Type: TF
Location: 15660 - 19721 (+)
Gene ID: HRGMv2_3901_5_11
Type: CAZyme
Location: 19729 - 20721 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Muribaculaceae
→
Genus
Limisoma
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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