dbCAN Logo

Cluster: HRGMv2_3891_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3891_55 HRGMv2_3891_55_1 3 1880 - 1.A.33.1.2
STP HRGMv2_3891_55 HRGMv2_3891_55_2 2472 2975 - Sigma70_r2 | Sigma70_r4_2
CAZyme HRGMv2_3891_55 HRGMv2_3891_55_3 3544 5730 + GH27
pfam HRGMv2_3891_55 HRGMv2_3891_55_4 5846 7141 - Mur_ligase_M
TC HRGMv2_3891_55 HRGMv2_3891_55_5 7158 7724 - 2.A.51.1.6
TC HRGMv2_3891_55 HRGMv2_3891_55_6 7735 8376 - 2.A.51.1.5
STP HRGMv2_3891_55 HRGMv2_3891_55_7 8399 10243 - SIS | SIS
CAZyme HRGMv2_3891_55 HRGMv2_3891_55_8 10518 11318 - GT2
CAZyme HRGMv2_3891_55 HRGMv2_3891_55_9 11335 12360 - GT2
Gene ID: HRGMv2_3891_55_1
Type: TC
Location: 3 - 1880 (-)
Gene ID: HRGMv2_3891_55_2
Type: STP
Location: 2472 - 2975 (-)
Gene ID: HRGMv2_3891_55_3
Type: CAZyme
Location: 3544 - 5730 (+)
Gene ID: HRGMv2_3891_55_4
Type: pfam
Location: 5846 - 7141 (-)
Gene ID: HRGMv2_3891_55_5
Type: TC
Location: 7158 - 7724 (-)
Gene ID: HRGMv2_3891_55_6
Type: TC
Location: 7735 - 8376 (-)
Gene ID: HRGMv2_3891_55_7
Type: STP
Location: 8399 - 10243 (-)
Gene ID: HRGMv2_3891_55_8
Type: CAZyme
Location: 10518 - 11318 (-)
Gene ID: HRGMv2_3891_55_9
Type: CAZyme
Location: 11335 - 12360 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List