Cluster: HRGMv2_3889_CGC11
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: HRGMv2_3889
- CGC Family ID: CGCFAM_00028
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3889_17 | HRGMv2_3889_17_29 | 31042 | 32490 | + | 9.B.126.2.2 |
| CAZyme | HRGMv2_3889_17 | HRGMv2_3889_17_30 | 32728 | 34698 | + | GH133 |
| CAZyme | HRGMv2_3889_17 | HRGMv2_3889_17_31 | 34707 | 35960 | + | GT4 |
| CAZyme | HRGMv2_3889_17 | HRGMv2_3889_17_32 | 36019 | 37431 | + | GH57 |
| pfam | HRGMv2_3889_17 | HRGMv2_3889_17_33 | 37441 | 38454 | + | Ldh_1_N | Ldh_1_C |
| TC | HRGMv2_3889_17 | HRGMv2_3889_17_34 | 38648 | 40225 | + | 1.A.23.4.5 |
| TC | HRGMv2_3889_17 | HRGMv2_3889_17_35 | 40363 | 40791 | + | 2.A.7.34.3 |
Gene ID: HRGMv2_3889_17_29
Type: TC
Location: 31042 - 32490 (+)
Type: TC
Location: 31042 - 32490 (+)
Gene ID: HRGMv2_3889_17_30
Type: CAZyme
Location: 32728 - 34698 (+)
Type: CAZyme
Location: 32728 - 34698 (+)
Gene ID: HRGMv2_3889_17_31
Type: CAZyme
Location: 34707 - 35960 (+)
Type: CAZyme
Location: 34707 - 35960 (+)
Gene ID: HRGMv2_3889_17_32
Type: CAZyme
Location: 36019 - 37431 (+)
Type: CAZyme
Location: 36019 - 37431 (+)
Gene ID: HRGMv2_3889_17_33
Type: pfam
Location: 37441 - 38454 (+)
Type: pfam
Location: 37441 - 38454 (+)
Gene ID: HRGMv2_3889_17_34
Type: TC
Location: 38648 - 40225 (+)
Type: TC
Location: 38648 - 40225 (+)
Gene ID: HRGMv2_3889_17_35
Type: TC
Location: 40363 - 40791 (+)
Type: TC
Location: 40363 - 40791 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.