Cluster: HRGMv2_3886_CGC12
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: HRGMv2_3886
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3886_20 | HRGMv2_3886_20_13 | 14253 | 17291 | - | 1.B.14.6.1 |
| TF | HRGMv2_3886_20 | HRGMv2_3886_20_14 | 17438 | 20251 | - | HTH_AraC |
| CAZyme | HRGMv2_3886_20 | HRGMv2_3886_20_15 | 20489 | 22345 | + | GH32 |
| TC | HRGMv2_3886_20 | HRGMv2_3886_20_16 | 22772 | 23956 | + | 2.A.1.7.17 |
| STP | HRGMv2_3886_20 | HRGMv2_3886_20_17 | 23958 | 24842 | + | PfkB |
| TF | HRGMv2_3886_20 | HRGMv2_3886_20_18 | 25023 | 25970 | + | GerE |
| TC | HRGMv2_3886_20 | HRGMv2_3886_20_19 | 25960 | 27315 | - | 2.A.1.10.1 |
| TC | HRGMv2_3886_20 | HRGMv2_3886_20_20 | 27336 | 29195 | - | 1.B.14.10.1 |
| CAZyme | HRGMv2_3886_20 | HRGMv2_3886_20_21 | 29606 | 32149 | - | GH2 |
| pfam | HRGMv2_3886_20 | HRGMv2_3886_20_22 | 32160 | 32876 | - | ROK |
| NULL(UNKNOWN) | HRGMv2_3886_20 | HRGMv2_3886_20_23 | 32873 | 32989 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3886_20 | HRGMv2_3886_20_24 | 33185 | 35512 | - | GH3 |
| CAZyme | HRGMv2_3886_20 | HRGMv2_3886_20_25 | 35542 | 36738 | - | CE1 |
Gene ID: HRGMv2_3886_20_13
Type: TC
Location: 14253 - 17291 (-)
Type: TC
Location: 14253 - 17291 (-)
Gene ID: HRGMv2_3886_20_14
Type: TF
Location: 17438 - 20251 (-)
Type: TF
Location: 17438 - 20251 (-)
Gene ID: HRGMv2_3886_20_15
Type: CAZyme
Location: 20489 - 22345 (+)
Type: CAZyme
Location: 20489 - 22345 (+)
Gene ID: HRGMv2_3886_20_16
Type: TC
Location: 22772 - 23956 (+)
Type: TC
Location: 22772 - 23956 (+)
Gene ID: HRGMv2_3886_20_17
Type: STP
Location: 23958 - 24842 (+)
Type: STP
Location: 23958 - 24842 (+)
Gene ID: HRGMv2_3886_20_18
Type: TF
Location: 25023 - 25970 (+)
Type: TF
Location: 25023 - 25970 (+)
Gene ID: HRGMv2_3886_20_19
Type: TC
Location: 25960 - 27315 (-)
Type: TC
Location: 25960 - 27315 (-)
Gene ID: HRGMv2_3886_20_20
Type: TC
Location: 27336 - 29195 (-)
Type: TC
Location: 27336 - 29195 (-)
Gene ID: HRGMv2_3886_20_21
Type: CAZyme
Location: 29606 - 32149 (-)
Type: CAZyme
Location: 29606 - 32149 (-)
Gene ID: HRGMv2_3886_20_22
Type: pfam
Location: 32160 - 32876 (-)
Type: pfam
Location: 32160 - 32876 (-)
Gene ID: HRGMv2_3886_20_23
Type:
Location: 32873 - 32989 (-)
Type:
Location: 32873 - 32989 (-)
Gene ID: HRGMv2_3886_20_24
Type: CAZyme
Location: 33185 - 35512 (-)
Type: CAZyme
Location: 33185 - 35512 (-)
Gene ID: HRGMv2_3886_20_25
Type: CAZyme
Location: 35542 - 36738 (-)
Type: CAZyme
Location: 35542 - 36738 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
Lepagella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.