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Cluster: HRGMv2_3885_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3885_1 HRGMv2_3885_1_63 65549 67009 + 2.A.1.14.25
pfam HRGMv2_3885_1 HRGMv2_3885_1_64 67229 68986 + tRNA-synt_2 | tRNA_anti-codon
pfam HRGMv2_3885_1 HRGMv2_3885_1_65 69006 70013 + NAD_Gly3P_dh_N | NAD_Gly3P_dh_C | GPD_NAD_C_bact
TC HRGMv2_3885_1 HRGMv2_3885_1_66 70058 70711 + 3.A.1.125.1
NULL(UNKNOWN) HRGMv2_3885_1 HRGMv2_3885_1_67 70721 71455 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3885_1 HRGMv2_3885_1_68 71635 73359 - FG-GAP_3 | FG-GAP_3 | FG-GAP_3 | FG-GAP_3
CAZyme HRGMv2_3885_1 HRGMv2_3885_1_69 73400 75151 - CBM91 | GH43_10
pfam HRGMv2_3885_1 HRGMv2_3885_1_70 75286 75789 - SpoU_methylase
TC HRGMv2_3885_1 HRGMv2_3885_1_71 75901 76695 - 3.A.1.13.2
TF HRGMv2_3885_1 HRGMv2_3885_1_72 76966 77349 + Pencillinase_R
peptidase HRGMv2_3885_1 HRGMv2_3885_1_73 77351 78700 + M56.UPW
TC HRGMv2_3885_1 HRGMv2_3885_1_74 78895 80259 - 2.A.22.5.3
peptidase HRGMv2_3885_1 HRGMv2_3885_1_75 80722 88473 + S08.UPA
TC HRGMv2_3885_1 HRGMv2_3885_1_76 88658 90325 + 9.B.174.1.1
pfam HRGMv2_3885_1 HRGMv2_3885_1_77 90332 93754 + DEAD | Helicase_C | CarD_TRCF_RID | TRCF | ResIII | UvrB_inter
pfam HRGMv2_3885_1 HRGMv2_3885_1_78 93943 95025 + Exo_endo_phos_3
CAZyme HRGMv2_3885_1 HRGMv2_3885_1_79 95032 95688 + GT51
Gene ID: HRGMv2_3885_1_63
Type: TC
Location: 65549 - 67009 (+)
Gene ID: HRGMv2_3885_1_64
Type: pfam
Location: 67229 - 68986 (+)
Gene ID: HRGMv2_3885_1_65
Type: pfam
Location: 69006 - 70013 (+)
Gene ID: HRGMv2_3885_1_66
Type: TC
Location: 70058 - 70711 (+)
Gene ID: HRGMv2_3885_1_67
Type:
Location: 70721 - 71455 (+)
Gene ID: HRGMv2_3885_1_68
Type: pfam
Location: 71635 - 73359 (-)
Gene ID: HRGMv2_3885_1_69
Type: CAZyme
Location: 73400 - 75151 (-)
Gene ID: HRGMv2_3885_1_70
Type: pfam
Location: 75286 - 75789 (-)
Gene ID: HRGMv2_3885_1_71
Type: TC
Location: 75901 - 76695 (-)
Gene ID: HRGMv2_3885_1_72
Type: TF
Location: 76966 - 77349 (+)
Gene ID: HRGMv2_3885_1_73
Type: peptidase
Location: 77351 - 78700 (+)
Gene ID: HRGMv2_3885_1_74
Type: TC
Location: 78895 - 80259 (-)
Gene ID: HRGMv2_3885_1_75
Type: peptidase
Location: 80722 - 88473 (+)
Gene ID: HRGMv2_3885_1_76
Type: TC
Location: 88658 - 90325 (+)
Gene ID: HRGMv2_3885_1_77
Type: pfam
Location: 90332 - 93754 (+)
Gene ID: HRGMv2_3885_1_78
Type: pfam
Location: 93943 - 95025 (+)
Gene ID: HRGMv2_3885_1_79
Type: CAZyme
Location: 95032 - 95688 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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