Cluster: HRGMv2_3878_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_3878
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3878_7 | HRGMv2_3878_7_21 | 22820 | 23896 | - | 1.B.42.1.13 |
| pfam | HRGMv2_3878_7 | HRGMv2_3878_7_22 | 23909 | 25039 | - | TGT |
| NULL(UNKNOWN) | HRGMv2_3878_7 | HRGMv2_3878_7_23 | 25436 | 26245 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_3878_7 | HRGMv2_3878_7_24 | 26527 | 29115 | + | 3.A.9.1.2 |
| NULL(UNKNOWN) | HRGMv2_3878_7 | HRGMv2_3878_7_25 | 29287 | 29799 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_3878_7 | HRGMv2_3878_7_26 | 30009 | 31619 | - | CBM93 | GH33 |
Gene ID: HRGMv2_3878_7_21
Type: TC
Location: 22820 - 23896 (-)
Type: TC
Location: 22820 - 23896 (-)
Gene ID: HRGMv2_3878_7_22
Type: pfam
Location: 23909 - 25039 (-)
Type: pfam
Location: 23909 - 25039 (-)
Gene ID: HRGMv2_3878_7_23
Type:
Location: 25436 - 26245 (+)
Type:
Location: 25436 - 26245 (+)
Gene ID: HRGMv2_3878_7_24
Type: TC
Location: 26527 - 29115 (+)
Type: TC
Location: 26527 - 29115 (+)
Gene ID: HRGMv2_3878_7_25
Type:
Location: 29287 - 29799 (-)
Type:
Location: 29287 - 29799 (-)
Gene ID: HRGMv2_3878_7_26
Type: CAZyme
Location: 30009 - 31619 (-)
Type: CAZyme
Location: 30009 - 31619 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.