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Cluster: HRGMv2_3878_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3878_5 HRGMv2_3878_5_55 81944 83689 + GH13_38
STP HRGMv2_3878_5 HRGMv2_3878_5_56 83744 84682 + Pribosyltran
TC HRGMv2_3878_5 HRGMv2_3878_5_57 84915 86825 - 1.A.33.1.2
STP HRGMv2_3878_5 HRGMv2_3878_5_58 87190 87603 + Glyoxalase
TC HRGMv2_3878_5 HRGMv2_3878_5_59 87609 89162 + 3.B.1.1.2
pfam HRGMv2_3878_5 HRGMv2_3878_5_60 89183 90097 + LTD | OAD_gamma
pfam HRGMv2_3878_5 HRGMv2_3878_5_61 90124 90552 + Biotin_lipoyl
TC HRGMv2_3878_5 HRGMv2_3878_5_62 90557 91714 + 3.B.1.1.2
pfam HRGMv2_3878_5 HRGMv2_3878_5_63 91912 92628 + DUF5131
CAZyme HRGMv2_3878_5 HRGMv2_3878_5_64 92874 95102 - GH3
pfam HRGMv2_3878_5 HRGMv2_3878_5_65 95125 96912 - DUF5040 | CBM96
CAZyme HRGMv2_3878_5 HRGMv2_3878_5_66 96931 99150 - GH3
pfam HRGMv2_3878_5 HRGMv2_3878_5_67 99252 100649 - FAD_binding_2 | GIDA | DAO | Thi4 | FAD_oxidored | NAD_binding_8
CAZyme HRGMv2_3878_5 HRGMv2_3878_5_68 100688 101821 - GH26
TC HRGMv2_3878_5 HRGMv2_3878_5_69 101868 103544 - 8.A.46.1.2
TC HRGMv2_3878_5 HRGMv2_3878_5_70 103589 106777 - 1.B.14.6.1
TF HRGMv2_3878_5 HRGMv2_3878_5_71 107073 111158 + HTH_AraC | HTH_AraC
CAZyme HRGMv2_3878_5 HRGMv2_3878_5_72 111339 112175 + GH16_3
NULL(UNKNOWN) HRGMv2_3878_5 HRGMv2_3878_5_73 112591 113088 + NULL(UNKNOWN)
[View Structural Homologs]
pfam HRGMv2_3878_5 HRGMv2_3878_5_74 113137 113565 + Por_Secre_tail
CAZyme HRGMv2_3878_5 HRGMv2_3878_5_75 113573 114844 + GH16_3
Gene ID: HRGMv2_3878_5_55
Type: CAZyme
Location: 81944 - 83689 (+)
Gene ID: HRGMv2_3878_5_56
Type: STP
Location: 83744 - 84682 (+)
Gene ID: HRGMv2_3878_5_57
Type: TC
Location: 84915 - 86825 (-)
Gene ID: HRGMv2_3878_5_58
Type: STP
Location: 87190 - 87603 (+)
Gene ID: HRGMv2_3878_5_59
Type: TC
Location: 87609 - 89162 (+)
Gene ID: HRGMv2_3878_5_60
Type: pfam
Location: 89183 - 90097 (+)
Gene ID: HRGMv2_3878_5_61
Type: pfam
Location: 90124 - 90552 (+)
Gene ID: HRGMv2_3878_5_62
Type: TC
Location: 90557 - 91714 (+)
Gene ID: HRGMv2_3878_5_63
Type: pfam
Location: 91912 - 92628 (+)
Gene ID: HRGMv2_3878_5_64
Type: CAZyme
Location: 92874 - 95102 (-)
Gene ID: HRGMv2_3878_5_65
Type: pfam
Location: 95125 - 96912 (-)
Gene ID: HRGMv2_3878_5_66
Type: CAZyme
Location: 96931 - 99150 (-)
Gene ID: HRGMv2_3878_5_67
Type: pfam
Location: 99252 - 100649 (-)
Gene ID: HRGMv2_3878_5_68
Type: CAZyme
Location: 100688 - 101821 (-)
Gene ID: HRGMv2_3878_5_69
Type: TC
Location: 101868 - 103544 (-)
Gene ID: HRGMv2_3878_5_70
Type: TC
Location: 103589 - 106777 (-)
Gene ID: HRGMv2_3878_5_71
Type: TF
Location: 107073 - 111158 (+)
Gene ID: HRGMv2_3878_5_72
Type: CAZyme
Location: 111339 - 112175 (+)
Gene ID: HRGMv2_3878_5_73
Type:
Location: 112591 - 113088 (+)
Gene ID: HRGMv2_3878_5_74
Type: pfam
Location: 113137 - 113565 (+)
Gene ID: HRGMv2_3878_5_75
Type: CAZyme
Location: 113573 - 114844 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_3878_5_58 vegan > omnivore 1.80659 0.03320
HRGMv2_3878_5_64 vegetarian > vegan 1.52513 0.02745
HRGMv2_3878_5_66 vegetarian > vegan 1.02361 0.02745
HRGMv2_3878_5_67 vegetarian > vegan 1.54462 0.02745
HRGMv2_3878_5_69 vegetarian > vegan 1.83302 0.02745
HRGMv2_3878_5_70 vegetarian > vegan 1.07082 0.02745

🧭 Explore Read Mapping of CGC

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