dbCAN Logo

Cluster: HRGMv2_3878_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC HRGMv2_3878_3 HRGMv2_3878_3_14 11795 13669 - 1.C.39.4.5
pfam HRGMv2_3878_3 HRGMv2_3878_3_15 13745 14158 - YbeY
TC HRGMv2_3878_3 HRGMv2_3878_3_16 14321 15553 - 9.B.156.3.1
pfam HRGMv2_3878_3 HRGMv2_3878_3_17 16075 16788 + DNA_alkylation
CAZyme HRGMv2_3878_3 HRGMv2_3878_3_18 16792 17676 - GT2
CAZyme HRGMv2_3878_3 HRGMv2_3878_3_19 17992 19125 + GT4
pfam HRGMv2_3878_3 HRGMv2_3878_3_20 19122 19922 + DUF5672
CAZyme HRGMv2_3878_3 HRGMv2_3878_3_21 19953 21161 - GT4
TC HRGMv2_3878_3 HRGMv2_3878_3_22 21439 23064 + 3.D.10.1.4
Gene ID: HRGMv2_3878_3_14
Type: TC
Location: 11795 - 13669 (-)
Gene ID: HRGMv2_3878_3_15
Type: pfam
Location: 13745 - 14158 (-)
Gene ID: HRGMv2_3878_3_16
Type: TC
Location: 14321 - 15553 (-)
Gene ID: HRGMv2_3878_3_17
Type: pfam
Location: 16075 - 16788 (+)
Gene ID: HRGMv2_3878_3_18
Type: CAZyme
Location: 16792 - 17676 (-)
Gene ID: HRGMv2_3878_3_19
Type: CAZyme
Location: 17992 - 19125 (+)
Gene ID: HRGMv2_3878_3_20
Type: pfam
Location: 19122 - 19922 (+)
Gene ID: HRGMv2_3878_3_21
Type: CAZyme
Location: 19953 - 21161 (-)
Gene ID: HRGMv2_3878_3_22
Type: TC
Location: 21439 - 23064 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List