Cluster: HRGMv2_3878_CGC38
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate: host glycan
- Genome ID: HRGMv2_3878
- CGC Family ID: CGCFAM_00376
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_3878_39 | HRGMv2_3878_39_1 | 81 | 1466 | - | 2.A.6.2.46 |
| TC | HRGMv2_3878_39 | HRGMv2_3878_39_2 | 1463 | 4561 | - | 2.A.6.2.22 |
| TC | HRGMv2_3878_39 | HRGMv2_3878_39_3 | 4568 | 5782 | - | 2.A.6.2.19 |
| TC | HRGMv2_3878_39 | HRGMv2_3878_39_4 | 6524 | 9841 | + | 1.B.14.6.13 |
| TC | HRGMv2_3878_39 | HRGMv2_3878_39_5 | 9867 | 11654 | + | 8.A.46.2.2 |
| CAZyme | HRGMv2_3878_39 | HRGMv2_3878_39_6 | 11751 | 14807 | + | GH85 |
Gene ID: HRGMv2_3878_39_1
Type: TC
Location: 81 - 1466 (-)
Type: TC
Location: 81 - 1466 (-)
Gene ID: HRGMv2_3878_39_2
Type: TC
Location: 1463 - 4561 (-)
Type: TC
Location: 1463 - 4561 (-)
Gene ID: HRGMv2_3878_39_3
Type: TC
Location: 4568 - 5782 (-)
Type: TC
Location: 4568 - 5782 (-)
Gene ID: HRGMv2_3878_39_4
Type: TC
Location: 6524 - 9841 (+)
Type: TC
Location: 6524 - 9841 (+)
Gene ID: HRGMv2_3878_39_5
Type: TC
Location: 9867 - 11654 (+)
Type: TC
Location: 9867 - 11654 (+)
Gene ID: HRGMv2_3878_39_6
Type: CAZyme
Location: 11751 - 14807 (+)
Type: CAZyme
Location: 11751 - 14807 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.