Cluster: HRGMv2_3878_CGC36
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: HRGMv2_3878
- CGC Family ID: CGCFAM_06402
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3878_31 | HRGMv2_3878_31_6 | 6432 | 8486 | - | GH13_36 |
| pfam | HRGMv2_3878_31 | HRGMv2_3878_31_7 | 8641 | 10614 | - | SusE | SusF_SusE |
| pfam | HRGMv2_3878_31 | HRGMv2_3878_31_8 | 10643 | 11752 | - | SusE |
| TC | HRGMv2_3878_31 | HRGMv2_3878_31_9 | 11793 | 13430 | - | 8.A.46.1.1 |
| TC | HRGMv2_3878_31 | HRGMv2_3878_31_10 | 13451 | 16513 | - | 1.B.14.6.1 |
| CAZyme | HRGMv2_3878_31 | HRGMv2_3878_31_11 | 16706 | 18889 | - | GH97 |
| CAZyme | HRGMv2_3878_31 | HRGMv2_3878_31_12 | 19056 | 20915 | - | GH13_46 |
| pfam | HRGMv2_3878_31 | HRGMv2_3878_31_13 | 21259 | 22848 | + | DUF6377 |
| CAZyme | HRGMv2_3878_31 | HRGMv2_3878_31_14 | 22900 | 23646 | - | GT2 |
| CAZyme | HRGMv2_3878_31 | HRGMv2_3878_31_15 | 23653 | 24909 | - | GT4 |
| pfam | HRGMv2_3878_31 | HRGMv2_3878_31_16 | 24931 | 25845 | - | Glycos_transf_2 |
| CAZyme | HRGMv2_3878_31 | HRGMv2_3878_31_17 | 25847 | 26896 | - | GT94 |
| TC | HRGMv2_3878_31 | HRGMv2_3878_31_18 | 26940 | 28394 | - | 2.A.66.2.23 |
| TC | HRGMv2_3878_31 | HRGMv2_3878_31_19 | 28682 | 29332 | + | 9.B.172.1.1 |
Gene ID: HRGMv2_3878_31_6
Type: CAZyme
Location: 6432 - 8486 (-)
Type: CAZyme
Location: 6432 - 8486 (-)
Gene ID: HRGMv2_3878_31_7
Type: pfam
Location: 8641 - 10614 (-)
Type: pfam
Location: 8641 - 10614 (-)
Gene ID: HRGMv2_3878_31_8
Type: pfam
Location: 10643 - 11752 (-)
Type: pfam
Location: 10643 - 11752 (-)
Gene ID: HRGMv2_3878_31_9
Type: TC
Location: 11793 - 13430 (-)
Type: TC
Location: 11793 - 13430 (-)
Gene ID: HRGMv2_3878_31_10
Type: TC
Location: 13451 - 16513 (-)
Type: TC
Location: 13451 - 16513 (-)
Gene ID: HRGMv2_3878_31_11
Type: CAZyme
Location: 16706 - 18889 (-)
Type: CAZyme
Location: 16706 - 18889 (-)
Gene ID: HRGMv2_3878_31_12
Type: CAZyme
Location: 19056 - 20915 (-)
Type: CAZyme
Location: 19056 - 20915 (-)
Gene ID: HRGMv2_3878_31_13
Type: pfam
Location: 21259 - 22848 (+)
Type: pfam
Location: 21259 - 22848 (+)
Gene ID: HRGMv2_3878_31_14
Type: CAZyme
Location: 22900 - 23646 (-)
Type: CAZyme
Location: 22900 - 23646 (-)
Gene ID: HRGMv2_3878_31_15
Type: CAZyme
Location: 23653 - 24909 (-)
Type: CAZyme
Location: 23653 - 24909 (-)
Gene ID: HRGMv2_3878_31_16
Type: pfam
Location: 24931 - 25845 (-)
Type: pfam
Location: 24931 - 25845 (-)
Gene ID: HRGMv2_3878_31_17
Type: CAZyme
Location: 25847 - 26896 (-)
Type: CAZyme
Location: 25847 - 26896 (-)
Gene ID: HRGMv2_3878_31_18
Type: TC
Location: 26940 - 28394 (-)
Type: TC
Location: 26940 - 28394 (-)
Gene ID: HRGMv2_3878_31_19
Type: TC
Location: 28682 - 29332 (+)
Type: TC
Location: 28682 - 29332 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_3878_31_14 | vegan > omnivore | 3.04687 | 0.03320 |