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Cluster: HRGMv2_3878_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3878_22 HRGMv2_3878_22_14 17953 18978 + GH130_5
TC HRGMv2_3878_22 HRGMv2_3878_22_15 18999 20639 + 2.A.21.3.19
NULL(UNKNOWN) HRGMv2_3878_22 HRGMv2_3878_22_16 20669 21985 + NULL(UNKNOWN)
[View Structural Homologs]
TC HRGMv2_3878_22 HRGMv2_3878_22_17 22060 25206 + 1.B.14.6.1
pfam HRGMv2_3878_22 HRGMv2_3878_22_18 25219 26826 + SusD_RagB | SusD-like_3
CAZyme HRGMv2_3878_22 HRGMv2_3878_22_19 26979 28976 + GH173
pfam HRGMv2_3878_22 HRGMv2_3878_22_20 29159 30091 + URO-D
CAZyme HRGMv2_3878_22 HRGMv2_3878_22_21 30114 34385 + CE2 | GH28
Gene ID: HRGMv2_3878_22_14
Type: CAZyme
Location: 17953 - 18978 (+)
Gene ID: HRGMv2_3878_22_15
Type: TC
Location: 18999 - 20639 (+)
Gene ID: HRGMv2_3878_22_16
Type:
Location: 20669 - 21985 (+)
Gene ID: HRGMv2_3878_22_17
Type: TC
Location: 22060 - 25206 (+)
Gene ID: HRGMv2_3878_22_18
Type: pfam
Location: 25219 - 26826 (+)
Gene ID: HRGMv2_3878_22_19
Type: CAZyme
Location: 26979 - 28976 (+)
Gene ID: HRGMv2_3878_22_20
Type: pfam
Location: 29159 - 30091 (+)
Gene ID: HRGMv2_3878_22_21
Type: CAZyme
Location: 30114 - 34385 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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