Cluster: HRGMv2_3878_CGC27
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_3878
- CGC Family ID: CGCFAM_09444
- Continent: Europe
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_22 | 25347 | 26465 | + | CE2 |
| pfam | HRGMv2_3878_21 | HRGMv2_3878_21_23 | 26565 | 27653 | - | Epimerase | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| pfam | HRGMv2_3878_21 | HRGMv2_3878_21_24 | 27666 | 28754 | - | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | HRGMv2_3878_21 | HRGMv2_3878_21_25 | 28900 | 29661 | - | GT26 |
| TC | HRGMv2_3878_21 | HRGMv2_3878_21_26 | 29814 | 30833 | - | 9.B.97.6.1 |
Gene ID: HRGMv2_3878_21_22
Type: CAZyme
Location: 25347 - 26465 (+)
Type: CAZyme
Location: 25347 - 26465 (+)
Gene ID: HRGMv2_3878_21_23
Type: pfam
Location: 26565 - 27653 (-)
Type: pfam
Location: 26565 - 27653 (-)
Gene ID: HRGMv2_3878_21_24
Type: pfam
Location: 27666 - 28754 (-)
Type: pfam
Location: 27666 - 28754 (-)
Gene ID: HRGMv2_3878_21_25
Type: CAZyme
Location: 28900 - 29661 (-)
Type: CAZyme
Location: 28900 - 29661 (-)
Gene ID: HRGMv2_3878_21_26
Type: TC
Location: 29814 - 30833 (-)
Type: TC
Location: 29814 - 30833 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Barnesiellaceae
Genus
Barnesiella
Species
Barnesiella merdipullorum
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.