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Cluster: HRGMv2_3878_CGC25

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3878_19 HRGMv2_3878_19_5 3570 5873 - CBM67 | GH78
pfam HRGMv2_3878_19 HRGMv2_3878_19_6 5981 9190 - NAGPA | GH123_cat
CAZyme HRGMv2_3878_19 HRGMv2_3878_19_7 9223 11856 - GH2
pfam HRGMv2_3878_19 HRGMv2_3878_19_8 11910 12779 - Shr-like_HID
CAZyme HRGMv2_3878_19 HRGMv2_3878_19_9 12817 14424 - GH20
pfam HRGMv2_3878_19 HRGMv2_3878_19_10 14421 15929 - Laminin_G_2 | Exo_endo_phos | Laminin_G_3
pfam HRGMv2_3878_19 HRGMv2_3878_19_11 16063 17838 - SusD_RagB | SusD-like_3
TC HRGMv2_3878_19 HRGMv2_3878_19_12 17851 21297 - 1.B.14.6.1
Gene ID: HRGMv2_3878_19_5
Type: CAZyme
Location: 3570 - 5873 (-)
Gene ID: HRGMv2_3878_19_6
Type: pfam
Location: 5981 - 9190 (-)
Gene ID: HRGMv2_3878_19_7
Type: CAZyme
Location: 9223 - 11856 (-)
Gene ID: HRGMv2_3878_19_8
Type: pfam
Location: 11910 - 12779 (-)
Gene ID: HRGMv2_3878_19_9
Type: CAZyme
Location: 12817 - 14424 (-)
Gene ID: HRGMv2_3878_19_10
Type: pfam
Location: 14421 - 15929 (-)
Gene ID: HRGMv2_3878_19_11
Type: pfam
Location: 16063 - 17838 (-)
Gene ID: HRGMv2_3878_19_12
Type: TC
Location: 17851 - 21297 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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