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Cluster: HRGMv2_3878_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_3878_15 HRGMv2_3878_15_18 20799 21821 - GT2
CAZyme HRGMv2_3878_15 HRGMv2_3878_15_19 21831 22787 - GT10
TF HRGMv2_3878_15 HRGMv2_3878_15_20 22892 23776 - HTH_AraC
TC HRGMv2_3878_15 HRGMv2_3878_15_21 23982 25112 + 2.A.6.2.29
TC HRGMv2_3878_15 HRGMv2_3878_15_22 25115 25714 + 2.A.6.2.22
TC HRGMv2_3878_15 HRGMv2_3878_15_23 25724 28255 + 2.A.6.2.22
TC HRGMv2_3878_15 HRGMv2_3878_15_24 28276 29622 + 2.A.6.2.20
pfam HRGMv2_3878_15 HRGMv2_3878_15_25 29801 30574 - DUF4130
pfam HRGMv2_3878_15 HRGMv2_3878_15_26 30587 31852 - Radical_SAM
CAZyme HRGMv2_3878_15 HRGMv2_3878_15_27 32109 33089 + GT2
peptidase HRGMv2_3878_15 HRGMv2_3878_15_28 33081 34163 - M20.UPA
TC HRGMv2_3878_15 HRGMv2_3878_15_29 34449 36257 + 4.C.1.1.14
Gene ID: HRGMv2_3878_15_18
Type: CAZyme
Location: 20799 - 21821 (-)
Gene ID: HRGMv2_3878_15_19
Type: CAZyme
Location: 21831 - 22787 (-)
Gene ID: HRGMv2_3878_15_20
Type: TF
Location: 22892 - 23776 (-)
Gene ID: HRGMv2_3878_15_21
Type: TC
Location: 23982 - 25112 (+)
Gene ID: HRGMv2_3878_15_22
Type: TC
Location: 25115 - 25714 (+)
Gene ID: HRGMv2_3878_15_23
Type: TC
Location: 25724 - 28255 (+)
Gene ID: HRGMv2_3878_15_24
Type: TC
Location: 28276 - 29622 (+)
Gene ID: HRGMv2_3878_15_25
Type: pfam
Location: 29801 - 30574 (-)
Gene ID: HRGMv2_3878_15_26
Type: pfam
Location: 30587 - 31852 (-)
Gene ID: HRGMv2_3878_15_27
Type: CAZyme
Location: 32109 - 33089 (+)
Gene ID: HRGMv2_3878_15_28
Type: peptidase
Location: 33081 - 34163 (-)
Gene ID: HRGMv2_3878_15_29
Type: TC
Location: 34449 - 36257 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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